Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QY054_RS04485 Genome accession   NZ_CP130602
Coordinates   854937..855299 (+) Length   120 a.a.
NCBI ID   WP_011242996.1    Uniprot ID   Q31PY3
Organism   Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 849937..860299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY054_RS04470 (QY054_04470) - 850237..852633 (+) 2397 WP_011377764.1 GH116 family glycosyl hydrolase -
  QY054_RS04475 (QY054_04475) - 852749..852922 (-) 174 WP_155813980.1 hypothetical protein -
  QY054_RS04480 (QY054_04480) - 853660..854886 (+) 1227 WP_231621330.1 response regulator -
  QY054_RS04485 (QY054_04485) pilH 854937..855299 (+) 363 WP_011242996.1 response regulator transcription factor Machinery gene
  QY054_RS04490 (QY054_04490) - 855397..855825 (+) 429 WP_231621329.1 chemotaxis protein CheW -
  QY054_RS04495 (QY054_04495) - 855897..860117 (+) 4221 WP_011377766.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13303.36 Da        Isoelectric Point: 4.6952

>NTDB_id=860525 QY054_RS04485 WP_011242996.1 854937..855299(+) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
MSTVLVVEDTASEMELITTYLRNSGYTVIGAADAKEALNKVSQFKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVIKPFQQEDLVKAVRSVDF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=860525 QY054_RS04485 WP_011242996.1 854937..855299(+) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
ATGAGTACAGTACTTGTTGTAGAAGACACCGCTTCTGAAATGGAGCTAATCACCACCTACTTGCGAAATAGCGGTTACAC
AGTCATCGGGGCTGCTGATGCCAAAGAAGCACTGAACAAGGTGAGCCAGTTTAAGCCTGATGTTGTTGTGACTGATGTGG
TCATGCCTGGCATGAGTGGCTTTGAATTGTGCCGGAGCCTCAAGAAAAATCCCGAGACAGAAAAGCTACCTGTCATTGTC
TGCAGTTCCAAAAATCAAGAGATTGATCGCCTCTGGGCGATGAAACAGGGGGCTGATGCTTACGTCATTAAGCCTTTCCA
ACAGGAAGATTTAGTAAAGGCTGTTCGCTCAGTTGACTTCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31PY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50

98.333

0.492
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367