Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   Q4I20_RS20240 Genome accession   NZ_CP130597
Coordinates   3847197..3847316 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain NCIB_3610     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3842197..3852316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4I20_RS20215 (Q4I20_20195) albG 3842361..3843062 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  Q4I20_RS20220 (Q4I20_20200) ywhL 3843068..3844444 (-) 1377 WP_003244415.1 YncE family protein -
  Q4I20_RS20225 (Q4I20_20205) ywhK 3844483..3845838 (-) 1356 WP_003227552.1 YncE family protein -
  Q4I20_RS20230 - 3845835..3846065 (-) 231 WP_009968328.1 hypothetical protein -
  Q4I20_RS20235 (Q4I20_20210) rapF 3846068..3847213 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  Q4I20_RS20240 (Q4I20_20215) phrF 3847197..3847316 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  Q4I20_RS20245 (Q4I20_20220) ywhH 3847415..3847888 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  Q4I20_RS20250 (Q4I20_20225) speB 3847920..3848792 (-) 873 WP_003227545.1 agmatinase -
  Q4I20_RS20255 (Q4I20_20230) speE 3848853..3849683 (-) 831 WP_003227543.1 spermidine synthase -
  Q4I20_RS20260 (Q4I20_20235) pbpG 3849885..3851960 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=860493 Q4I20_RS20240 WP_009968329.1 3847197..3847316(+) (phrF) [Bacillus subtilis strain NCIB_3610]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=860493 Q4I20_RS20240 WP_009968329.1 3847197..3847316(+) (phrF) [Bacillus subtilis strain NCIB_3610]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487