Detailed information NTG0860492

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: Q4I20_RS20235
• Genome accession: NZ_CP130597
• Coordinates: 3846068..3847213 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain NCIB_3610
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3841068..3852213

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q4I20_RS20210 (Q4I20_20190)	albF	3841084..3842364 (+)	1281	WP_003242974.1	M16 family metallopeptidase	-
Q4I20_RS20215 (Q4I20_20195)	albG	3842361..3843062 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
Q4I20_RS20220 (Q4I20_20200)	ywhL	3843068..3844444 (-)	1377	WP_003244415.1	YncE family protein	-
Q4I20_RS20225 (Q4I20_20205)	ywhK	3844483..3845838 (-)	1356	WP_003227552.1	YncE family protein	-
Q4I20_RS20230	-	3845835..3846065 (-)	231	WP_009968328.1	hypothetical protein	-
Q4I20_RS20235 (Q4I20_20210)	rapF	3846068..3847213 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
Q4I20_RS20240 (Q4I20_20215)	phrF	3847197..3847316 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
Q4I20_RS20245 (Q4I20_20220)	ywhH	3847415..3847888 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
Q4I20_RS20250 (Q4I20_20225)	speB	3847920..3848792 (-)	873	WP_003227545.1	agmatinase	-
Q4I20_RS20255 (Q4I20_20230)	speE	3848853..3849683 (-)	831	WP_003227543.1	spermidine synthase	-
Q4I20_RS20260 (Q4I20_20235)	pbpG	3849885..3851960 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=860492 Q4I20_RS20235 WP_003227549.1 3846068..3847213(+) (rapF) [Bacillus subtilis strain NCIB_3610]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=860492 Q4I20_RS20235 WP_003227549.1 3846068..3847213(+) (rapF) [Bacillus subtilis strain NCIB_3610]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572