Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   Q4I20_RS17215 Genome accession   NZ_CP130597
Coordinates   3252843..3253487 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain NCIB_3610     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247843..3258487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4I20_RS17180 (Q4I20_17165) mrpB 3249035..3249466 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  Q4I20_RS17185 (Q4I20_17170) mrpC 3249466..3249807 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  Q4I20_RS17190 (Q4I20_17175) mrpD 3249800..3251281 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  Q4I20_RS17195 (Q4I20_17180) mrpE 3251287..3251763 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  Q4I20_RS17200 (Q4I20_17185) mrpF 3251763..3252047 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  Q4I20_RS17205 (Q4I20_17190) mnhG 3252031..3252405 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  Q4I20_RS17210 (Q4I20_17195) yuxO 3252444..3252824 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  Q4I20_RS17215 (Q4I20_17200) comA 3252843..3253487 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  Q4I20_RS17220 (Q4I20_17205) comP 3253568..3255877 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  Q4I20_RS17225 (Q4I20_17210) comX 3255892..3256059 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  Q4I20_RS17230 (Q4I20_17215) comQ 3256047..3256946 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  Q4I20_RS17235 (Q4I20_17220) degQ 3257131..3257271 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  Q4I20_RS17240 (Q4I20_17225) - 3257493..3257618 (+) 126 WP_003228793.1 hypothetical protein -
  Q4I20_RS17245 (Q4I20_17230) - 3257732..3258100 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=860478 Q4I20_RS17215 WP_003220716.1 3252843..3253487(-) (comA) [Bacillus subtilis strain NCIB_3610]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=860478 Q4I20_RS17215 WP_003220716.1 3252843..3253487(-) (comA) [Bacillus subtilis strain NCIB_3610]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1