Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q3V88_RS05900 Genome accession   NZ_CP130537
Coordinates   1210623..1211495 (+) Length   290 a.a.
NCBI ID   WP_000931871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1205623..1216495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS05880 ylqF 1206459..1207343 (+) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -
  Q3V88_RS05885 - 1207327..1208094 (+) 768 WP_000176406.1 ribonuclease HII -
  Q3V88_RS05890 sucC 1208203..1209369 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  Q3V88_RS05895 sucD 1209391..1210299 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  Q3V88_RS05900 dprA 1210623..1211495 (+) 873 WP_000931871.1 DNA-processing protein DprA Machinery gene
  Q3V88_RS05905 topA 1211669..1213744 (+) 2076 WP_025174257.1 type I DNA topoisomerase -
  Q3V88_RS05910 trmFO 1213900..1215207 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33246.53 Da        Isoelectric Point: 8.3112

>NTDB_id=859830 Q3V88_RS05900 WP_000931871.1 1210623..1211495(+) (dprA) [Staphylococcus aureus strain SA12-SX]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLFSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=859830 Q3V88_RS05900 WP_000931871.1 1210623..1211495(+) (dprA) [Staphylococcus aureus strain SA12-SX]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCTTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.677

100

0.686
  dprA Staphylococcus aureus N315

66.897

100

0.669
  dprA Lactococcus lactis subsp. cremoris KW2

37.857

96.552

0.366