Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Q3V90_RS07905 Genome accession   NZ_CP130528
Coordinates   1633654..1634100 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA18-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628654..1639100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V90_RS07875 gcvPA 1629580..1630926 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V90_RS07880 gcvT 1630946..1632037 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V90_RS07885 - 1632196..1632720 (-) 525 WP_001015116.1 shikimate kinase -
  Q3V90_RS07890 - 1632710..1632856 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V90_RS07895 comGF 1632953..1633450 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V90_RS07900 comGE 1633368..1633667 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V90_RS07905 comGD 1633654..1634100 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V90_RS07910 comGC 1634078..1634389 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V90_RS07915 comGB 1634403..1635473 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V90_RS07920 comGA 1635445..1636419 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V90_RS07925 - 1636471..1637094 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V90_RS07930 - 1637091..1637420 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V90_RS07935 - 1637420..1638406 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V90_RS07940 - 1638403..1638606 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=859583 Q3V90_RS07905 WP_001796473.1 1633654..1634100(-) (comGD) [Staphylococcus aureus strain SA18-SX]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=859583 Q3V90_RS07905 WP_001796473.1 1633654..1634100(-) (comGD) [Staphylococcus aureus strain SA18-SX]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993