Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q2T90_RS07265 Genome accession   NZ_CP130489
Coordinates   1481977..1482489 (+) Length   170 a.a.
NCBI ID   WP_103166510.1    Uniprot ID   A0A2K4DN90
Organism   Staphylococcus devriesei strain GYZ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1476977..1487489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS07235 (Q2T90_07235) - 1477817..1478644 (+) 828 WP_302885552.1 ParB/RepB/Spo0J family partition protein -
  Q2T90_RS07240 (Q2T90_07240) - 1478823..1479698 (+) 876 WP_107505638.1 mechanosensitive ion channel family protein -
  Q2T90_RS07245 (Q2T90_07245) - 1479725..1479940 (+) 216 WP_103166507.1 DUF951 domain-containing protein -
  Q2T90_RS07250 (Q2T90_07250) ychF 1479940..1481037 (+) 1098 WP_103166508.1 redox-regulated ATPase YchF -
  Q2T90_RS07255 (Q2T90_07255) - 1481176..1481367 (-) 192 WP_103166509.1 hypothetical protein -
  Q2T90_RS07260 (Q2T90_07260) rpsF 1481659..1481955 (+) 297 WP_002461101.1 30S ribosomal protein S6 -
  Q2T90_RS07265 (Q2T90_07265) ssbA 1481977..1482489 (+) 513 WP_103166510.1 single-stranded DNA-binding protein Machinery gene
  Q2T90_RS07270 (Q2T90_07270) rpsR 1482536..1482778 (+) 243 WP_002451519.1 30S ribosomal protein S18 -
  Q2T90_RS07275 (Q2T90_07275) - 1483203..1483460 (-) 258 WP_103166511.1 transcriptional regulator -
  Q2T90_RS07280 (Q2T90_07280) - 1483866..1484114 (+) 249 WP_103165686.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  Q2T90_RS07285 (Q2T90_07285) - 1484187..1484444 (-) 258 WP_103165685.1 hypothetical protein -
  Q2T90_RS07290 (Q2T90_07290) - 1484889..1485517 (+) 629 Protein_1405 LysE family translocator -
  Q2T90_RS07295 (Q2T90_07295) - 1485539..1486117 (+) 579 WP_103165684.1 histidine phosphatase family protein -
  Q2T90_RS07300 (Q2T90_07300) - 1486174..1486809 (-) 636 WP_107506353.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18739.28 Da        Isoelectric Point: 4.7306

>NTDB_id=858598 Q2T90_RS07265 WP_103166510.1 1481977..1482489(+) (ssbA) [Staphylococcus devriesei strain GYZ2]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQSGQRNQGGNNDFQDYGQGFGGQQSGQNTSYSNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=858598 Q2T90_RS07265 WP_103166510.1 1481977..1482489(+) (ssbA) [Staphylococcus devriesei strain GYZ2]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAAGCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAATGTTGTTGTTT
TCAGAAGACAAGCAGAGAATGTGAATAACTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCGGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAAAGTGGCCAACGTAACCAAGGTGGTAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGCCAACAATCAG
GACAAAATACGTCATATAGTAATAATAATTCATCAAATAATAAACAATCTGATAACCCATTTGCAAATGCGAATGGCCCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4DN90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.553
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376