Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   Q3A90_RS03410 Genome accession   NZ_CP130477
Coordinates   638466..638963 (+) Length   165 a.a.
NCBI ID   WP_042991817.1    Uniprot ID   -
Organism   Priestia megaterium strain S1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633466..643963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A90_RS03385 (Q3A90_03385) - 633678..634361 (+) 684 WP_013059772.1 response regulator transcription factor -
  Q3A90_RS03390 (Q3A90_03390) fliS 634745..635176 (+) 432 WP_302893095.1 flagellar export chaperone FliS -
  Q3A90_RS03395 (Q3A90_03395) - 635297..635734 (+) 438 WP_302892769.1 YaaR family protein -
  Q3A90_RS03400 (Q3A90_03400) - 635841..636686 (+) 846 WP_290099517.1 DegV family protein -
  Q3A90_RS03405 (Q3A90_03405) - 636766..638274 (+) 1509 WP_290099516.1 DEAD/DEAH box helicase -
  Q3A90_RS03410 (Q3A90_03410) comFC 638466..638963 (+) 498 WP_042991817.1 ComF family protein Machinery gene
  Q3A90_RS03415 (Q3A90_03415) - 639025..639435 (+) 411 WP_221780797.1 TIGR03826 family flagellar region protein -
  Q3A90_RS03420 (Q3A90_03420) flgM 639598..639852 (+) 255 WP_029319359.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q3A90_RS03425 (Q3A90_03425) - 639874..640335 (+) 462 WP_290099618.1 flagellar protein FlgN -
  Q3A90_RS03430 (Q3A90_03430) flgK 640355..641878 (+) 1524 WP_221780799.1 flagellar hook-associated protein FlgK -
  Q3A90_RS03435 (Q3A90_03435) flgL 641887..642768 (+) 882 WP_290099511.1 flagellar hook-associated protein FlgL -
  Q3A90_RS03440 (Q3A90_03440) fliW 642849..643271 (+) 423 WP_221780801.1 flagellar assembly protein FliW -
  Q3A90_RS03445 (Q3A90_03445) csrA 643296..643526 (+) 231 WP_013085431.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19318.09 Da        Isoelectric Point: 8.4544

>NTDB_id=858515 Q3A90_RS03410 WP_042991817.1 638466..638963(+) (comFC) [Priestia megaterium strain S1]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELLSDNIEIPLIRCSGTKQSKKNRRSRLTERLEFKVVDSSMVTNQEFLLIDDIYTTGATVRQAANCLQEAGARSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=858515 Q3A90_RS03410 WP_042991817.1 638466..638963(+) (comFC) [Priestia megaterium strain S1]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTTAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTTCTATAAAAAAGAAT
GTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAGAGATTATATGAGAGAGGGTTTAACCAATCCTTAGCG
TTAGCTGAGCTTCTCAGTGACAATATAGAAATACCTCTTATTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGACAGAAAGGCTGGAATTTAAAGTAGTCGATTCCTCAATGGTTACGAATCAAGAATTTCTCTTGATTGATG
ACATTTATACAACAGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACGTTCAGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

47.674

100

0.497
  comFC/cflB Streptococcus pneumoniae Rx1

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.714

100

0.364