Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   Q3A90_RS03320 Genome accession   NZ_CP130477
Coordinates   616485..616847 (+) Length   120 a.a.
NCBI ID   WP_014457774.1    Uniprot ID   A0A8D3WU46
Organism   Priestia megaterium strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 608932..621358 616485..616847 within 0


Gene organization within MGE regions


Location: 608932..621358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A90_RS03270 (Q3A90_03270) spoIID 608932..609954 (+) 1023 WP_221780784.1 stage II sporulation protein D -
  Q3A90_RS03275 (Q3A90_03275) - 610116..610946 (+) 831 WP_014457768.1 M23 family metallopeptidase -
  Q3A90_RS03280 (Q3A90_03280) spoIIID 611223..611486 (+) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  Q3A90_RS03285 (Q3A90_03285) - 611673..612674 (+) 1002 WP_221780785.1 rod shape-determining protein -
  Q3A90_RS03290 (Q3A90_03290) - 612789..613613 (+) 825 WP_290099534.1 flagellar hook-basal body protein -
  Q3A90_RS03295 (Q3A90_03295) - 613637..614458 (+) 822 WP_221780787.1 flagellar hook-basal body protein -
  Q3A90_RS03300 (Q3A90_03300) fabZ 614542..614976 (+) 435 WP_221780788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3A90_RS03305 (Q3A90_03305) - 615005..615427 (-) 423 WP_014457772.1 helix-turn-helix domain-containing protein -
  Q3A90_RS03310 (Q3A90_03310) - 615745..615924 (+) 180 WP_140451794.1 hypothetical protein -
  Q3A90_RS03315 (Q3A90_03315) - 615951..616388 (-) 438 WP_014457773.1 YwpF-like family protein -
  Q3A90_RS03320 (Q3A90_03320) ssbB 616485..616847 (+) 363 WP_014457774.1 single-stranded DNA-binding protein Machinery gene
  Q3A90_RS03325 (Q3A90_03325) - 617384..618430 (-) 1047 WP_221780789.1 LysM peptidoglycan-binding domain-containing protein -
  Q3A90_RS03330 (Q3A90_03330) - 618728..621358 (-) 2631 WP_290099526.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=858512 Q3A90_RS03320 WP_014457774.1 616485..616847(+) (ssbB) [Priestia megaterium strain S1]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=858512 Q3A90_RS03320 WP_014457774.1 616485..616847(+) (ssbB) [Priestia megaterium strain S1]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCCGGTTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508