Detailed information NTG0085833

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LYSCAS_RS03910
• Genome accession: NZ_AP024545
• Coordinates: 775032..776474 (+)
• Length: 480 a.a.
• NCBI ID: WP_213435858.1
• Uniprot ID: -
• Organism: Noviluteimonas caseinilytica strain JCM32879
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 770032..781474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYSCAS_RS03895 (LYSCAS_07600)	sucD	771126..772001 (-)	876	WP_213435852.1	succinate--CoA ligase subunit alpha	-
LYSCAS_RS03900 (LYSCAS_07610)	sucC	772013..773179 (-)	1167	WP_213435854.1	ADP-forming succinate--CoA ligase subunit beta	-
LYSCAS_RS03905 (LYSCAS_07620)	-	773378..774967 (+)	1590	WP_244858656.1	PAS domain-containing sensor histidine kinase	-
LYSCAS_RS03910 (LYSCAS_07630)	pilR	775032..776474 (+)	1443	WP_213435858.1	sigma-54 dependent transcriptional regulator	Regulator
LYSCAS_RS03915 (LYSCAS_07640)	-	776690..777145 (+)	456	WP_213435860.1	pilin	-
LYSCAS_RS03920 (LYSCAS_07650)	-	777424..777879 (+)	456	WP_213435862.1	pilin	-
LYSCAS_RS03925 (LYSCAS_07660)	-	777969..779912 (+)	1944	WP_213435863.1	tol-pal system YbgF family protein	-

Sequence

Protein

• Length: 480 a.a.
• Molecular weight: 51967.75 Da
• Isoelectric Point: 6.7102

>NTDB_id=85833 LYSCAS_RS03910 WP_213435858.1 775032..776474(+) (pilR) [Noviluteimonas caseinilytica strain JCM32879]
MNDQRSALIVDDERDIRELLVLTLGRMGLRTETASSLGEARALLAAHRFDLCLTDMRLPDGSGIDLIGEITQQYPNTPVA
MITAFGNVDAAVEALKAGAFDFVSKPVDLAVLRGLVKHALDLPQKGSKRSASIAAASDVLATRLFGDSPAIVALKATLGK
VARSQAPVYIAGESGVGKELVARTIHEQGARGAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTL
FLDEVAELPLPMQVKLLRAIQEKSIRPVGANAEVLVDVRILSATHKDLGALVNEGRFRHDLYYRINVIELRVPPLRERRD
DLPGLADAILRRLSGAQGRHLPALSADAVDALRTYPFPGNVRELENILERAMALAEGDVIELADLRLPVWGPAMTTPAQP
GAREPVREAPLMREPMTRDPRTTDPRDSMTSALPSYIEEIERNAIQQALEDNRYNKTKAAAALGITFRALRYKLKKLGID

Nucleotide

• Length: 1443 bp

>NTDB_id=85833 LYSCAS_RS03910 WP_213435858.1 775032..776474(+) (pilR) [Noviluteimonas caseinilytica strain JCM32879]
ATGAACGACCAGCGCAGTGCATTGATCGTCGACGACGAGCGCGACATCCGCGAATTGCTGGTGCTCACGCTGGGTCGCAT
GGGCTTGCGCACCGAAACCGCGTCGAGCCTCGGCGAGGCGCGCGCGTTGCTCGCGGCGCACCGCTTCGACCTGTGCCTCA
CCGACATGCGCCTGCCCGACGGCTCGGGCATCGACCTAATCGGCGAAATCACGCAGCAATACCCCAACACGCCGGTCGCG
ATGATCACCGCGTTCGGCAACGTCGACGCCGCGGTGGAAGCCCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCCGT
GGACCTGGCCGTGTTGCGCGGCCTGGTGAAGCACGCGCTGGATCTTCCGCAGAAAGGCAGCAAGCGCAGCGCGAGCATCG
CGGCGGCAAGCGACGTGCTGGCAACGCGCCTGTTCGGCGACTCGCCCGCCATCGTCGCGCTCAAGGCCACGCTCGGCAAA
GTCGCGCGCAGCCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAACTCGTCGCGCGCACCATCCACGA
ACAGGGCGCACGCGGCGCAGGTCCCTTCGTGCCGGTCAACTGCGGTGCGATTCCCGCCGAACTGATGGAGAGCGAATTCT
TCGGACACAAGAAGGGGTCGTTCACCGGCGCGCACGCGGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTG
TTCCTCGACGAAGTCGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCC
CGTCGGCGCGAACGCCGAAGTCCTCGTCGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTCGGCGCGCTCGTCAACG
AAGGCCGCTTCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCGCGAC
GACCTGCCGGGCCTGGCCGATGCGATCCTGCGTCGCCTCTCCGGCGCGCAGGGCCGCCACCTGCCCGCGCTCAGCGCGGA
CGCGGTGGATGCGCTGCGCACCTATCCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCGATGGCGC
TGGCCGAAGGCGACGTCATCGAACTCGCGGACCTGCGCCTGCCCGTCTGGGGCCCGGCGATGACCACGCCGGCGCAGCCC
GGCGCGCGCGAACCGGTGCGCGAAGCCCCGCTGATGCGCGAACCGATGACGCGCGATCCGCGCACCACCGATCCGCGCGA
CAGCATGACCAGCGCGTTGCCGAGCTACATCGAAGAGATCGAACGCAACGCGATCCAGCAGGCGCTCGAAGACAATCGCT
ACAACAAGACCAAGGCCGCCGCGGCCCTCGGGATCACCTTCCGGGCCCTGCGCTACAAGCTCAAGAAGCTCGGCATCGAC
TGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (437-477)

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (145-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.006	99.375	0.606
pilR	Acinetobacter baumannii strain A118	47.569	98.542	0.469