Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   Q3O83_RS17120 Genome accession   NZ_CP130445
Coordinates   3447265..3447954 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3442265..3452954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS17085 (Q3O83_17085) - 3442463..3442945 (-) 483 WP_003151394.1 flagellar protein FlgN -
  Q3O83_RS17090 (Q3O83_17090) flgM 3442960..3443226 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q3O83_RS17095 (Q3O83_17095) - 3443296..3443715 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  Q3O83_RS17100 (Q3O83_17100) comFC 3443789..3444478 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  Q3O83_RS17105 (Q3O83_17105) - 3444484..3444768 (-) 285 WP_057080260.1 competence protein ComFB -
  Q3O83_RS17110 (Q3O83_17110) comFA 3444826..3446211 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  Q3O83_RS17115 (Q3O83_17115) - 3446319..3447167 (-) 849 WP_043867471.1 DegV family protein -
  Q3O83_RS17120 (Q3O83_17120) degU 3447265..3447954 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q3O83_RS17125 (Q3O83_17125) degS 3448031..3449194 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  Q3O83_RS17130 (Q3O83_17130) - 3449417..3450064 (+) 648 WP_043867472.1 YigZ family protein -
  Q3O83_RS17135 (Q3O83_17135) - 3450069..3451283 (+) 1215 WP_043867473.1 LCP family protein -
  Q3O83_RS17140 (Q3O83_17140) - 3451373..3452449 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=858238 Q3O83_RS17120 WP_003219701.1 3447265..3447954(-) (degU) [Bacillus amyloliquefaciens strain C6.7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=858238 Q3O83_RS17120 WP_003219701.1 3447265..3447954(-) (degU) [Bacillus amyloliquefaciens strain C6.7]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1