Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   I0P84_RS09900 Genome accession   NZ_AP024524
Coordinates   2040287..2040994 (-) Length   235 a.a.
NCBI ID   WP_005235028.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2035287..2045994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS09885 (RYU24_19670) clpB 2035699..2038278 (-) 2580 WP_175967300.1 ATP-dependent chaperone ClpB -
  I0P84_RS09890 (RYU24_19680) - 2038533..2038898 (-) 366 WP_005235031.1 MbcA/ParS/Xre antitoxin family protein -
  I0P84_RS09895 (RYU24_19690) - 2039044..2040093 (-) 1050 WP_214001389.1 NADP(H)-dependent aldo-keto reductase -
  I0P84_RS09900 (RYU24_19700) crp 2040287..2040994 (-) 708 WP_005235028.1 cAMP-activated global transcriptional regulator CRP Regulator
  I0P84_RS09905 (RYU24_19710) - 2041142..2041564 (+) 423 WP_004782528.1 OsmC family protein -
  I0P84_RS09910 (RYU24_19720) - 2041608..2042651 (-) 1044 WP_214001390.1 metallophosphoesterase -
  I0P84_RS09915 (RYU24_19730) - 2042898..2045135 (-) 2238 WP_034170011.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26314.04 Da        Isoelectric Point: 4.7380

>NTDB_id=85813 I0P84_RS09900 WP_005235028.1 2040287..2040994(-) (crp) [Acinetobacter variabilis strain RYU24]
MTSNFSQLSTDALSPGQLPVSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEPEALGAGEFEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=85813 I0P84_RS09900 WP_005235028.1 2040287..2040994(-) (crp) [Acinetobacter variabilis strain RYU24]
ATGACTTCAAACTTTTCACAATTAAGCACAGACGCACTTTCGCCGGGGCAACTACCTGTATCAGTGAAAGCGTTATTAAA
ACGTGCATATATCAATCGCTATCCAAAACGTACCACGATCGTGGATGCAGGGTCAGAATCTAAATCTCTGTATTTAATTC
TGAAGGGGTCTGTGTCTATCATTCTTCGTGAAGATGATGAACGTGAGATTGTGGTAGCTTATTTAAATGCGGGAGACTTC
TTTGGGGAAATGGGTCTTTTCGAAGCAAATCCACAGCGTACTGCGGAAGTGCGTACTCGTGATGTCTGTGAAATTGCTGA
AATTACCTATGAAAACTTTCATGAAATTAGCAAACAATATCCAGACCTAAGCTATGCAGTTTTTGCCCAGCTGGTTCGCC
GTCTGAAAAATACCACACGTAAAGTGACTGACCTGGCATTTATTGATGTATCTGGTCGTATTGCGCGTTGTCTGATTGAC
CTGTCATCTCAGCCAGAAGCGATGATCTTGCCAAATGGTCGTCAAATCCGTATTACCCGTCAGGAAATCGGCCGTATTGT
AGGCTGTTCACGTGAAATGGTCGGTCGTGTTCTAAAAACTCTAGAAGAACAGGGCATGATTGAAACCGATGGTAAGGCGA
TTCTGATTTTTGATGCATCGCTGGAAGAACCTGAAGCACTGGGTGCTGGCGAGTTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.619

94.894

0.898
  crp Vibrio cholerae strain A1552

47.716

83.83

0.4
  crp Haemophilus influenzae Rd KW20

47.692

82.979

0.396

Multiple sequence alignment