Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   Q3F87_RS04590 Genome accession   NZ_CP130328
Coordinates   763345..763728 (+) Length   127 a.a.
NCBI ID   WP_180011986.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 758345..768728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS04580 (Q3F87_04580) - 761238..762365 (-) 1128 WP_166139290.1 efflux RND transporter periplasmic adaptor subunit -
  Q3F87_RS04585 (Q3F87_04585) - 762417..763061 (-) 645 WP_159123370.1 hypothetical protein -
  Q3F87_RS04590 (Q3F87_04590) pilG 763345..763728 (+) 384 WP_180011986.1 twitching motility response regulator PilG Regulator
  Q3F87_RS04595 (Q3F87_04595) - 763754..764122 (+) 369 WP_004784985.1 response regulator -
  Q3F87_RS04600 (Q3F87_04600) - 764128..764664 (+) 537 WP_159123371.1 chemotaxis protein CheW -
  Q3F87_RS04605 (Q3F87_04605) - 764711..766780 (+) 2070 WP_004784982.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14317.36 Da        Isoelectric Point: 4.7172

>NTDB_id=857885 Q3F87_RS04590 WP_180011986.1 763345..763728(+) (pilG) [Acinetobacter variabilis strain TB2-2B]
MDDKFQNLKVMVIDDSKTIRRTAETLLQREGYEVVTAVDGFEALSKIAETNPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHISA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=857885 Q3F87_RS04590 WP_180011986.1 763345..763728(+) (pilG) [Acinetobacter variabilis strain TB2-2B]
ATGGACGATAAATTCCAAAATCTAAAAGTTATGGTCATTGATGACTCAAAGACCATTCGTCGTACAGCAGAAACTCTTCT
ACAGCGCGAAGGATATGAAGTCGTGACTGCGGTAGATGGTTTTGAAGCTTTGTCAAAAATCGCAGAAACCAATCCGGATA
TCGTATTTGTAGACATCATGATGCCTCGTCTAGATGGTTATCAAACTTGTGCATTGATTAAAAATTCTCAAAATTATCAG
AATATTCCTGTGATTATGCTTTCGAGTAAAGATGGCTTATTTGATCAGGCCAAAGGTCGTGTTGTTGGTTCGGACGAATA
CTTGACTAAACCTTTCAGTAAAGATGAATTGCTTAACGCAATCCGTAACCATATTAGTGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

94.488

100

0.945
  vicR Streptococcus mutans UA159

43.59

92.126

0.402
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37