Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q3F87_RS02140 Genome accession   NZ_CP130328
Coordinates   273456..274877 (-) Length   473 a.a.
NCBI ID   WP_302700647.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 268456..279877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02125 (Q3F87_02125) lptG 269517..270587 (+) 1071 WP_180003801.1 LPS export ABC transporter permease LptG -
  Q3F87_RS02130 (Q3F87_02130) gpmI 270712..272259 (+) 1548 WP_180015005.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Q3F87_RS02135 (Q3F87_02135) - 272283..273455 (+) 1173 WP_179992208.1 S41 family peptidase -
  Q3F87_RS02140 (Q3F87_02140) pilR 273456..274877 (-) 1422 WP_302700647.1 sigma-54 dependent transcriptional regulator Regulator
  Q3F87_RS02145 (Q3F87_02145) pilS 274895..276460 (-) 1566 WP_180016630.1 PAS domain-containing sensor histidine kinase Regulator
  Q3F87_RS02150 (Q3F87_02150) - 276488..277123 (-) 636 WP_005233474.1 response regulator -
  Q3F87_RS02155 (Q3F87_02155) - 277340..278392 (+) 1053 WP_034703413.1 serine hydrolase -
  Q3F87_RS02160 (Q3F87_02160) thrC 278452..279591 (-) 1140 WP_104426956.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53608.74 Da        Isoelectric Point: 6.0931

>NTDB_id=857869 Q3F87_RS02140 WP_302700647.1 273456..274877(-) (pilR) [Acinetobacter variabilis strain TB2-2B]
MVEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKCLADHQYDACLTDLNLPDGNGLQLLDWINQHSPHLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYYQNNSNDSLEHKLLIGQSLPIQQLRVTLKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDTEIDIDFRVISASHQDLDALVQQGKFRQDLFFRIHVMDLVLPPLRERGQDIL
LLAEHFIQKICQEWEIPPKKLTERSKEFLLEQYYPGNVRELRNIIERAITLSDEDKIDLQHLQTAPLRHTVSVQSETANL
AEPTPSTDQIIILKKLPEEGLELYLEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEEE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=857869 Q3F87_RS02140 WP_302700647.1 273456..274877(-) (pilR) [Acinetobacter variabilis strain TB2-2B]
ATTGTGGAACAACAACCACTGGTTTTATTGGTGGATGATGAGGAAGATCTATGTACCCTCATGCAAATGTCATTGATGCG
CATGGGAATCCGTACGCATATTGCCCATCGTCTGGAAGATGCGAAAAAATGTCTGGCAGATCATCAATATGATGCCTGTC
TGACAGATCTAAATCTTCCTGATGGCAATGGTCTGCAATTACTGGACTGGATTAACCAGCATTCCCCTCACCTTCCGGTA
GCTGTTCTAACGGCTTATGGCAATATGGATATTGCTATTGCTGCACTCAAGGCAGGTGCATTTGACTTTGTTAGCAAACC
GATCAATCAAAAGCATCTGGAACAACTGCTGCAAAAAGCACTGAATAAACCAGTAGACTATTATCAGAATAATTCCAATG
ATTCATTAGAACATAAATTGCTGATTGGACAATCTCTGCCTATTCAGCAATTGCGGGTCACCTTGAAAAAAATTGCCCGT
TCTCAAGCCCCGGTATTTATCACCGGTGAATCTGGAACTGGAAAGGAAGTGGTGGCAAATCTGGTCCATCGCCTCAGTAA
CCGGAGTGAAGGACCCTTTATTGCCATTAACTGTGGCGCAATCCCGACTGAATTGATGGAAAGCGAACTGTTTGGCCATA
AGAAAGGCAGCTTTACTGGCGCGACACAGGACAAGCAGGGACTAATTCAGTCTGCCCATGGAGGTAGTTTGTTCTTAGAT
GAAATTGCTGAATTACCGCTATCTATGCAAGTCAAACTGTTACGTGCCGTCCAGGAAAAACGCATTCGTCCCGTCGGTTC
CGATACTGAAATTGATATCGATTTCCGTGTTATTAGCGCCAGCCATCAGGACCTTGATGCACTGGTACAACAAGGCAAAT
TCCGTCAGGACTTGTTCTTCCGTATTCATGTGATGGATCTGGTCTTACCACCACTGCGTGAGCGCGGCCAGGATATTCTG
CTCCTCGCTGAGCATTTTATTCAAAAGATCTGCCAAGAATGGGAAATTCCTCCGAAAAAGCTGACAGAACGGAGCAAAGA
ATTTTTACTGGAGCAATATTATCCGGGCAATGTACGCGAACTGCGCAACATTATTGAACGCGCAATTACTTTGAGTGATG
AAGACAAGATTGATCTTCAGCATCTGCAAACTGCGCCACTACGTCATACGGTATCCGTCCAATCAGAAACGGCAAATCTG
GCAGAGCCGACCCCATCTACGGATCAGATCATTATTCTCAAGAAACTCCCCGAAGAAGGTCTGGAACTGTATTTAGAAAA
GATTGAAAAAGAAATTCTGCTGAATGCTTTGAATCTGACGCATTGGAATCGTACATTGGCCGCCAAAAAACTCGGTATGT
CGTTTCGCTCTTTACGTTATCGTCTGAAAAAATTCGGACTGGATACCGAAGAAGAGGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.091

100

0.774
  pilR Pseudomonas aeruginosa PAK

48.59

97.463

0.474