Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   Q3F87_RS02145 Genome accession   NZ_CP130328
Coordinates   274895..276460 (-) Length   521 a.a.
NCBI ID   WP_180016630.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 269895..281460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02130 (Q3F87_02130) gpmI 270712..272259 (+) 1548 WP_180015005.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Q3F87_RS02135 (Q3F87_02135) - 272283..273455 (+) 1173 WP_179992208.1 S41 family peptidase -
  Q3F87_RS02140 (Q3F87_02140) pilR 273456..274877 (-) 1422 WP_302700647.1 sigma-54 dependent transcriptional regulator Regulator
  Q3F87_RS02145 (Q3F87_02145) pilS 274895..276460 (-) 1566 WP_180016630.1 PAS domain-containing sensor histidine kinase Regulator
  Q3F87_RS02150 (Q3F87_02150) - 276488..277123 (-) 636 WP_005233474.1 response regulator -
  Q3F87_RS02155 (Q3F87_02155) - 277340..278392 (+) 1053 WP_034703413.1 serine hydrolase -
  Q3F87_RS02160 (Q3F87_02160) thrC 278452..279591 (-) 1140 WP_104426956.1 threonine synthase -
  Q3F87_RS02165 (Q3F87_02165) - 279649..280953 (-) 1305 WP_005233480.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59729.80 Da        Isoelectric Point: 6.3704

>NTDB_id=857870 Q3F87_RS02145 WP_180016630.1 274895..276460(-) (pilS) [Acinetobacter variabilis strain TB2-2B]
MAQTSSYSELNQYHLGLWYSAYRLIISTGLLLIFLLTYPDMTTDYQYPKLYHYALMISVAVNTVQLFTLRWVKRLIQPQF
ILIFASDVFFLSLLTLASQGPNVHLGLIFVITIFSASLLLDAKKALIITLIAVISIIYQHFIGSIFAFSSLTNIGNSALL
AFLFFVVYGSGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIEPMYAHER
FSLYQSQNDLFELIRFENLENGERFQFESQQSRYNIHVQVQKLIVPHQTLTLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSEPEQQQVLHQMISRQATRIDRIIQDTLNMVKNKETHPVVIQLNEFIPLFIQEDLADVAD
QIQFNIDVPLAIQFDEAQLRQILINLIRNAIRHNSPDSPHIQLNIHPYEHKVWIDVRDFGSGVATHDQELLFKPFFSTSI
HGTGLGLYLSHSFCEANQAQLNYISQEQGACFRISCQRVTA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=857870 Q3F87_RS02145 WP_180016630.1 274895..276460(-) (pilS) [Acinetobacter variabilis strain TB2-2B]
ATGGCGCAAACATCCAGTTATTCTGAACTGAATCAATATCATCTGGGCCTATGGTATAGCGCCTACCGCCTGATTATCAG
CACGGGTCTGTTGCTGATTTTTCTGCTGACTTATCCTGATATGACTACAGATTATCAGTATCCTAAACTCTATCACTATG
CCTTAATGATTAGCGTCGCCGTCAATACTGTGCAGCTGTTTACGCTGAGATGGGTAAAGCGCCTGATTCAGCCGCAGTTC
ATTCTGATTTTTGCCAGCGATGTCTTTTTTCTCAGTTTATTGACCTTGGCCAGTCAGGGTCCAAATGTCCATCTCGGACT
GATTTTTGTTATTACCATTTTTTCAGCTTCATTATTACTGGATGCCAAGAAGGCCCTGATCATCACCCTGATTGCGGTGA
TTAGTATCATCTATCAGCATTTTATCGGCAGTATTTTTGCCTTTTCCTCGCTTACCAATATCGGGAATAGTGCCCTGCTG
GCCTTTTTGTTTTTTGTCGTCTATGGCTCAGGACAAATTGCGGTACGGCGCTTTCAGATTCTGGAAAACCTGAATTTTTC
TCAATCGCTGGAACTATATCGCTTACAGAATATTAACCGCTATATTCTGGAACAGATTGAAACCGGCTATCTGGTTTTAG
ATGAGAATTACCATGTGGTGCTCAGTAATCCGGCTGCCTGTCATCTGCTCGGCATTGAGCCAATGTATGCCCATGAAAGA
TTTTCGTTATACCAATCTCAAAATGACCTGTTTGAACTGATCCGTTTTGAAAATCTGGAAAATGGCGAGCGGTTTCAATT
TGAATCCCAGCAGAGTCGTTATAATATTCACGTGCAGGTACAAAAGCTGATTGTGCCGCACCAGACTCTGACTCTCCTCG
TGCTGCAAGATGCCCGCAAACTTAATCAGCAGGTGCAACAGTTAAAGCTTGCTGCTCTAGGCCAGCTTTCCGCCAGTATT
GCCCATGAAATTCGCAATCCTCTGGCTGCCATTGTACAGGCCAATGATCTTTATCTCGATTCTGAACCTGAACAGCAACA
AGTTCTGCATCAGATGATTAGCCGACAGGCCACCCGGATTGACCGGATTATTCAGGACACCCTGAATATGGTGAAGAATA
AAGAAACCCATCCAGTCGTAATTCAGCTGAATGAATTTATACCACTGTTTATTCAGGAAGATTTAGCAGATGTGGCGGAC
CAGATTCAATTTAATATTGATGTACCACTGGCAATTCAGTTTGATGAGGCCCAGTTACGTCAGATTCTAATTAACCTGAT
TCGTAATGCTATCCGTCATAATTCACCGGATTCACCCCATATTCAATTGAATATTCACCCATATGAACATAAGGTATGGA
TAGATGTCCGGGATTTTGGCTCTGGTGTTGCCACCCATGATCAGGAATTATTATTTAAACCTTTTTTCAGCACGTCTATC
CATGGAACGGGACTCGGACTATATTTATCACACAGTTTTTGTGAAGCCAATCAGGCACAACTCAACTACATTTCACAAGA
ACAGGGCGCATGCTTTCGGATTAGCTGTCAACGTGTGACAGCATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.218

96.929

0.564