Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   I0P84_RS01035 Genome accession   NZ_AP024524
Coordinates   228686..229840 (-) Length   384 a.a.
NCBI ID   WP_104426934.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223686..234840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS01010 (RYU24_02020) - 224113..224658 (-) 546 WP_214001833.1 glutathione peroxidase -
  I0P84_RS01015 (RYU24_02030) - 224833..225378 (-) 546 WP_104426931.1 glutathione peroxidase -
  I0P84_RS01020 (RYU24_02040) - 225570..226481 (+) 912 WP_104426932.1 DMT family transporter -
  I0P84_RS01025 (RYU24_02050) - 226879..227448 (-) 570 WP_034171542.1 L-threonylcarbamoyladenylate synthase -
  I0P84_RS01030 (RYU24_02060) dprA 227489..228628 (-) 1140 WP_175966351.1 DNA-processing protein DprA Machinery gene
  I0P84_RS01035 (RYU24_02070) tsaP 228686..229840 (-) 1155 WP_104426934.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I0P84_RS01040 (RYU24_02080) def 229961..230491 (+) 531 WP_004780730.1 peptide deformylase -
  I0P84_RS01045 (RYU24_02090) - 230584..230994 (+) 411 WP_104426935.1 DUF2946 family protein -
  I0P84_RS01050 (RYU24_02100) - 231066..233132 (+) 2067 WP_214001834.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42010.20 Da        Isoelectric Point: 9.0542

>NTDB_id=85786 I0P84_RS01035 WP_104426934.1 228686..229840(-) (tsaP) [Acinetobacter variabilis strain RYU24]
MKKVLKGMPFFSALGLKNQMLALAVCVGVSMGTMYSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYIGSTSLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTIVAADSVQGTPYILGTADQRVLAGKGQKVYARGNGLVVGQRYAVYREADPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENTVAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLESELPIKVGANIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=85786 I0P84_RS01035 WP_104426934.1 228686..229840(-) (tsaP) [Acinetobacter variabilis strain RYU24]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTAAAAAATCAAATGCTCGCACTGGCAGTTTGTGT
CGGAGTGAGTATGGGGACAATGTATTCAGCCGAGGCAGCTCCTGCCCGCAACGTCAATCCACCTGCTTTAAAAGCCAGTG
CGCCTAATGTCTACGTGGTCAAAAAAGGCGATACATTGTGGGATATTTCAAAACGTTTCTTAAAAAATCCGGTGCGTTGG
CCAGAAATCTGGGCCAGTAACAAGCACGTGAAAAATCCACATTGGATTTTTCCAGGTGATCGCCTGTTGATGTGTGACTA
TCAAGGTCGTCCAATTATCGGTAAAGACGAAGGTGATGGCTGTGAAGGTATCATCAGTCGTTATATCGGTAGTACTTCAT
TACAACCACAGGTTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCATTAGCGCATATCCAGCAATGGCTTGAA
CGCTATACCATAGTGGCAGCTGATTCAGTTCAAGGTACGCCTTATATTCTCGGCACTGCAGACCAGCGCGTACTGGCCGG
TAAAGGCCAGAAGGTCTATGCACGCGGCAATGGTTTGGTGGTTGGCCAGCGTTATGCGGTGTATCGTGAGGCAGACCCTT
ATGTCTTTACCGATGCCAATGGCAAGAAATATACGGCTGCTCTAGAGCTGCAACAGGTTGCTTCCGGAATCGCAGTACGT
GGCGAAGGTGATGTCACCACGCTGGAATTGACAGATAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTATTACCTGA
ATACGATCCGATGTTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAATACGGTTGCTGGTGGTCAGATTGTGCGTGTAC
TGGGTTCAATTGGTACAGCAGCACGTCATAGTGTCGTGACAATTGACCGTGGTACGGCACATGGGGTTCAGACTGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTCGTGACTGATCCGAAAACCAAAGAGCGCGTACAGCTTCCAGGTGAGCGCAT
TGGCAATGTGATGGTCTTTAAAACTTTTGACCAGCTGAGCTATGCTTATGTGCTGGAAAGTGAGTTACCTATCAAGGTGG
GTGCCAATATTCAAGCGCCATTGCTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.532

100

0.677

Multiple sequence alignment