Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STYK_RS08565 Genome accession   NZ_AP024523
Coordinates   1699366..1701345 (-) Length   659 a.a.
NCBI ID   WP_261804895.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694366..1706345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS08545 (STYK_16390) gpsB 1695482..1695811 (-) 330 WP_192855371.1 cell division regulator GpsB -
  STYK_RS08550 (STYK_16400) - 1695884..1696411 (-) 528 WP_084925906.1 DUF1273 domain-containing protein -
  STYK_RS08555 (STYK_16410) recU 1696478..1697074 (+) 597 WP_033685492.1 Holliday junction resolvase RecU -
  STYK_RS08560 (STYK_16420) pbp1a 1697071..1699224 (+) 2154 WP_261804894.1 penicillin-binding protein PBP1A -
  STYK_RS08565 (STYK_16430) amiA3 1699366..1701345 (-) 1980 WP_261804895.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS08570 (STYK_16440) glf 1701545..1702648 (-) 1104 WP_261020303.1 UDP-galactopyranose mutase -
  STYK_RS08580 (STYK_16450) - 1702855..1704300 (-) 1446 WP_261804896.1 LCP family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73162.85 Da        Isoelectric Point: 4.7966

>NTDB_id=85762 STYK_RS08565 WP_261804895.1 1699366..1701345(-) (amiA3) [Streptococcus toyakuensis strain TP1632]
MKTRKVLALVGVTLLAAGVLAACSGGSGAKGEQTFAFTYEKDPDNLNYLTTGKASTSDITSNVIDGLLENDKYGNLIPSL
AEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSEALYLVQDSIKGLDAYAKGENKDFSQVGI
KALDDQTIQYTLNKPESFWNSKITMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSLVTKSSVEFVKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSFTAARLFPTNASFTELEKEMKDNIVYTQQDSTTYIVGTNIDRQSYKYTSKT
SEEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADSQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVIIDIQQLQKDEVN
NITYFAENAAGEDWDLSDNVGWSPDFADPSTYLDIIKPSVGESTKTYLGFDSGKDNVAAKKVGLYDYEKLVTEAGDEATD
VSKRYDKYAAAQAWLTDSALIIPTTSRTGRPILSKMVPFTIPFALSGNKGTSEPLLYKYLELQDKAVTADEYQKAQDKWM
KEKEESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=85762 STYK_RS08565 WP_261804895.1 1699366..1701345(-) (amiA3) [Streptococcus toyakuensis strain TP1632]
ATGAAAACAAGAAAAGTATTGGCTCTTGTGGGAGTGACTTTATTAGCAGCGGGTGTTTTAGCTGCTTGTTCTGGTGGTTC
TGGTGCTAAAGGTGAGCAGACTTTTGCATTTACATACGAGAAAGATCCTGATAATCTTAATTATTTAACAACTGGTAAAG
CTTCAACATCTGATATTACTAGTAATGTGATTGACGGATTGCTTGAAAATGATAAATACGGGAACCTTATTCCTTCATTG
GCAGAAGACTGGTCAGTATCTAAAGATGGTTTGACTTACACCTACACTATTCGTAAGGACGCAAAATGGTACACATCCGA
AGGAGAAGAGTATGCTCCTGTTAAGGCTCAGGACTTTGTGACAGGACTTAAATATGCAACGGATAAGAAATCAGAAGCTC
TTTACTTGGTACAAGATTCGATCAAAGGTCTGGATGCTTATGCTAAAGGGGAAAATAAAGATTTCTCTCAAGTTGGAATT
AAAGCCCTTGACGATCAAACGATTCAATACACGTTGAACAAACCAGAAAGTTTTTGGAATTCTAAAATAACCATGGGTGT
GCTTGCGCCAGTTAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCCAAAGCAACAGATCCAAGTAGTCTCTTGT
ATAATGGTCCTTATTTGTTGAAATCTCTTGTGACTAAATCCTCTGTTGAATTTGTGAAGAATCCGAACTACTGGGATAAG
GATAATGTACATATTGATAAGGTCAAATTGTCATTCTGGGATGGTCAAGATACCAGCAAACCAGCAGAAAACTTTAAAGA
TGGAAGCTTTACGGCAGCTCGTCTCTTTCCAACAAATGCAAGTTTTACAGAGCTTGAGAAAGAGATGAAAGACAATATTG
TATATACCCAACAAGACTCTACGACTTATATAGTTGGTACAAATATTGATCGCCAATCTTATAAGTACACATCTAAGACC
AGCGAAGAACAAAAGACATCTACTAAAAAGGCTCTCTTAAATAAGGATTTCCGTCAGGCTATTGCTTTCGGATTTGACCG
TACAGCCTATGCCTCTCAGTTGAATGGACAAACTGGAGCAAGCAAAATCTTACGTAATCTCTTTGTTCCACCAACATTTG
TCCAAGCAGATGGTAAAAACTTTGGCGATATGGTCAAAGAGAAATTGGTCACTTATGGGGATGAATGGAAGGATGTTAAT
CTTGCAGATTCTCAGGATGGCCTTTACAATCCTGAGAAAGCCAAGGCAGAATTTGCTAAAGCCAAATCAGCCCTACAAGC
TGAGGGAGTACAATTCCCAATTCATCTAGATATGCCTGTTGACCAAACAGCAACTACAAAAGTTCAGCGCGTCCAATCTA
TGAAACAATCCTTGGAAGCAACTTTAGGAACTGATAATGTTATTATTGATATTCAACAACTACAAAAAGACGAAGTAAAC
AATATTACATATTTTGCTGAAAATGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGAGTCCTGACTTTGC
CGATCCATCAACCTACCTTGATATTATCAAACCATCTGTAGGAGAAAGTACTAAAACATATTTAGGGTTTGACTCAGGGA
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACAGAAGCTGGTGATGAGGCTACAGAT
GTTTCTAAACGATATGATAAATACGCTGCGGCCCAAGCTTGGTTGACAGATAGTGCTTTGATTATTCCAACTACATCTCG
TACAGGGCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTGAGC
CACTCTTGTATAAATACCTTGAACTTCAAGACAAGGCAGTCACAGCAGATGAATACCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGAAGAATCCAATAAAAAAGCGCAAGAAGAGCTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.182

100

0.583
  amiA3 Streptococcus thermophilus LMG 18311

57.576

100

0.577
  amiA Streptococcus salivarius strain HSISS4

57.576

100

0.577

Multiple sequence alignment