Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   Q2B68_RS18175 Genome accession   NZ_CP130280
Coordinates   3636450..3637139 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain PM415     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3631450..3642139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS18140 (Q2B68_18140) - 3631648..3632130 (-) 483 WP_003151394.1 flagellar protein FlgN -
  Q2B68_RS18145 (Q2B68_18145) flgM 3632145..3632411 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q2B68_RS18150 (Q2B68_18150) - 3632481..3632900 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  Q2B68_RS18155 (Q2B68_18155) comFC 3632974..3633663 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  Q2B68_RS18160 (Q2B68_18160) - 3633669..3633953 (-) 285 WP_057080260.1 competence protein ComFB -
  Q2B68_RS18165 (Q2B68_18165) comFA 3634011..3635396 (-) 1386 WP_302565017.1 DEAD/DEAH box helicase Machinery gene
  Q2B68_RS18170 (Q2B68_18170) - 3635504..3636352 (-) 849 WP_003151387.1 DegV family protein -
  Q2B68_RS18175 (Q2B68_18175) degU 3636450..3637139 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q2B68_RS18180 (Q2B68_18180) degS 3637216..3638379 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  Q2B68_RS18185 (Q2B68_18185) - 3638602..3639249 (+) 648 WP_003151384.1 YigZ family protein -
  Q2B68_RS18190 (Q2B68_18190) - 3639254..3640468 (+) 1215 WP_003151383.1 LCP family protein -
  Q2B68_RS18195 (Q2B68_18195) - 3640558..3641634 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=857580 Q2B68_RS18175 WP_003219701.1 3636450..3637139(-) (degU) [Bacillus amyloliquefaciens strain PM415]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=857580 Q2B68_RS18175 WP_003219701.1 3636450..3637139(-) (degU) [Bacillus amyloliquefaciens strain PM415]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTGA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1