Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q2B68_RS18165 Genome accession   NZ_CP130280
Coordinates   3634011..3635396 (-) Length   461 a.a.
NCBI ID   WP_302565017.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3629011..3640396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS18130 (Q2B68_18130) flgL 3629186..3630103 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  Q2B68_RS18135 (Q2B68_18135) flgK 3630115..3631632 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  Q2B68_RS18140 (Q2B68_18140) - 3631648..3632130 (-) 483 WP_003151394.1 flagellar protein FlgN -
  Q2B68_RS18145 (Q2B68_18145) flgM 3632145..3632411 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q2B68_RS18150 (Q2B68_18150) - 3632481..3632900 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  Q2B68_RS18155 (Q2B68_18155) comFC 3632974..3633663 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  Q2B68_RS18160 (Q2B68_18160) - 3633669..3633953 (-) 285 WP_057080260.1 competence protein ComFB -
  Q2B68_RS18165 (Q2B68_18165) comFA 3634011..3635396 (-) 1386 WP_302565017.1 DEAD/DEAH box helicase Machinery gene
  Q2B68_RS18170 (Q2B68_18170) - 3635504..3636352 (-) 849 WP_003151387.1 DegV family protein -
  Q2B68_RS18175 (Q2B68_18175) degU 3636450..3637139 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q2B68_RS18180 (Q2B68_18180) degS 3637216..3638379 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  Q2B68_RS18185 (Q2B68_18185) - 3638602..3639249 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52452.90 Da        Isoelectric Point: 10.1928

>NTDB_id=857579 Q2B68_RS18165 WP_302565017.1 3634011..3635396(-) (comFA) [Bacillus amyloliquefaciens strain PM415]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWGPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=857579 Q2B68_RS18165 WP_302565017.1 3634011..3635396(-) (comFA) [Bacillus amyloliquefaciens strain PM415]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629