Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   Q2B68_RS16220 Genome accession   NZ_CP130280
Coordinates   3253829..3256120 (-) Length   763 a.a.
NCBI ID   WP_274413647.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3248829..3261120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS16180 (Q2B68_16180) - 3249289..3249720 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  Q2B68_RS16185 (Q2B68_16185) - 3249720..3250061 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  Q2B68_RS16190 (Q2B68_16190) - 3250054..3251535 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  Q2B68_RS16195 (Q2B68_16195) - 3251541..3252017 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  Q2B68_RS16200 (Q2B68_16200) - 3252017..3252301 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  Q2B68_RS16205 (Q2B68_16205) mnhG 3252285..3252659 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  Q2B68_RS16210 (Q2B68_16210) - 3252699..3253082 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  Q2B68_RS16215 (Q2B68_16215) comA 3253104..3253748 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  Q2B68_RS16220 (Q2B68_16220) comP 3253829..3256120 (-) 2292 WP_274413647.1 histidine kinase Regulator
  Q2B68_RS16225 (Q2B68_16225) comX 3256132..3256296 (-) 165 WP_007613432.1 competence pheromone ComX -
  Q2B68_RS16230 (Q2B68_16230) - 3256296..3257174 (-) 879 WP_231040471.1 polyprenyl synthetase family protein -
  Q2B68_RS16235 (Q2B68_16235) degQ 3257359..3257499 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  Q2B68_RS16240 (Q2B68_16240) - 3257965..3258306 (+) 342 WP_014305721.1 hypothetical protein -
  Q2B68_RS16245 (Q2B68_16245) - 3258313..3259533 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 88378.54 Da        Isoelectric Point: 7.3901

>NTDB_id=857574 Q2B68_RS16220 WP_274413647.1 3253829..3256120(-) (comP) [Bacillus amyloliquefaciens strain PM415]
MKSKYNKISVVLILLTLVYVIYLTYISTNNLLVGATISENKQGEIKIKDVEDFTMAYYAGVQKGDIVKNINGQNVKSINI
QMNKLKNVNSMVVDRNGHDIEIKLNLFNDRNFSTYLIPIIFYVVCLFCCFFIIKINEEKNLKSALVLIVFLLSASIAYIS
AGGSAKGDLLSRCIMLLTLITVPLNYLLFLYHYFKELGTVLFSKKVFALYLFPTINILFELFRSRLSFGDFIPKFNLISF
FLLFLVVAYYFIVILRRNKDTDQAHIIKVLVVINILAFSPFLCLYLIPYVFFNDYYVSSFLTASFMLLIPFSLVYQFMSN
KIYNVDFILSKLKYYGFLALTPTIILVTTIELLREPEENFYNLKLTFLIYILMLAVFYYKEILDFRFKLKRVSERFNYQD
SIYKFTQLIRNSSSLNQVFGELKTTILEVTLTSKVYIFEVTYDGNVKAFDERDSSLIDDYQVLLNSVTVEIGKITEFNQG
FAMKVGERGDRSFVVLCLSKMNTPRLSREEISWLKTLSFYVNVSIENVMKIEELMNHLEDLKKQETNPVWLKKLMFTIEE
KQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCQLEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYDLGLVKA
VSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDGVGFNQE
EGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKADIEMEL

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=857574 Q2B68_RS16220 WP_274413647.1 3253829..3256120(-) (comP) [Bacillus amyloliquefaciens strain PM415]
ATGAAGTCCAAGTACAATAAGATTTCAGTTGTCTTAATTCTGCTTACATTGGTATATGTCATTTATCTGACTTATATAAG
CACAAATAATCTTTTAGTCGGCGCCACCATTTCTGAAAATAAACAGGGCGAAATTAAAATAAAAGATGTAGAAGATTTTA
CAATGGCATATTACGCCGGAGTGCAAAAGGGAGATATAGTAAAGAATATTAACGGCCAAAATGTAAAGTCAATTAATATT
CAAATGAATAAGCTGAAAAATGTAAACTCGATGGTCGTTGATAGAAACGGTCATGATATTGAGATTAAGCTCAATTTATT
TAATGATAGGAACTTCAGTACTTACTTAATACCGATAATTTTTTATGTAGTATGTTTATTTTGCTGCTTCTTCATCATCA
AGATAAATGAAGAAAAAAACTTGAAATCTGCTTTGGTGCTAATTGTATTTCTTTTGTCTGCTTCAATCGCATATATCAGT
GCTGGAGGATCGGCAAAAGGCGATTTGCTTAGCAGATGCATCATGTTGTTAACATTAATAACTGTACCTTTAAATTATCT
TCTGTTTCTTTATCATTACTTTAAAGAATTAGGTACTGTGCTTTTCAGCAAAAAAGTTTTTGCTTTGTATTTATTTCCAA
CTATAAATATATTATTTGAATTATTTCGGTCGCGATTATCTTTTGGTGATTTTATTCCAAAATTTAATTTGATTTCGTTT
TTTCTTCTTTTTTTGGTTGTAGCATATTACTTTATTGTTATTTTGAGAAGAAACAAAGATACTGACCAGGCACATATTAT
AAAGGTGCTTGTGGTTATAAATATATTGGCATTTTCGCCTTTTTTATGTCTGTATCTTATACCGTATGTATTTTTTAATG
ATTATTATGTCTCTTCTTTCTTAACAGCATCATTTATGCTGCTGATACCTTTTTCACTTGTATATCAATTCATGTCGAAT
AAAATATATAACGTTGATTTTATCTTAAGTAAGTTAAAATATTACGGCTTTTTAGCGTTAACCCCAACTATAATTCTGGT
TACGACAATTGAGTTATTACGTGAGCCGGAAGAAAATTTTTACAATCTTAAACTGACATTTTTAATTTATATTTTAATGT
TAGCTGTTTTTTATTATAAAGAAATACTCGATTTCCGGTTTAAATTAAAAAGGGTCTCTGAAAGATTCAATTACCAAGAC
AGTATTTATAAGTTTACCCAATTAATCAGAAACTCGTCTTCTTTAAATCAGGTTTTTGGAGAATTAAAAACCACCATTCT
CGAAGTCACTCTTACAAGTAAAGTGTATATATTTGAAGTTACGTATGATGGGAATGTAAAGGCATTTGACGAAAGAGATT
CAAGTTTGATAGATGATTATCAAGTGCTTTTAAATAGTGTTACTGTTGAAATAGGAAAAATAACGGAGTTTAATCAAGGT
TTCGCAATGAAAGTAGGAGAACGGGGAGATAGATCATTCGTTGTTCTCTGTTTGTCTAAGATGAATACGCCCCGTTTATC
ACGTGAAGAAATTTCTTGGTTAAAAACATTATCTTTTTACGTTAATGTTTCAATAGAAAACGTGATGAAAATCGAAGAAC
TTATGAATCATCTCGAAGATTTAAAGAAACAGGAGACAAACCCGGTCTGGCTCAAAAAGCTGATGTTTACGATCGAGGAA
AAGCAGCGTTCGGATTTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGATTTGATTTCTTTGAAGCGCCAGTGTGAGCT
GTTTCTGGCCGATTTTAAGAAAGAGGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATCAGATGAATGAGCAGATGT
CGGATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTTCGGCCTCAGCTGCTGTATGATTTGGGTCTGGTCAAGGCG
GTATCCAAGCTTGCCGCGCAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTTTACGGCGGCGCT
GGATTTGGATACGCAGCTGAATTTGTACCGCATTATTCAGGAATTTCTTTCGAACGCCATGAAGCATTCACAGGCGAATG
AGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGGTGTCGGCTTTAATCAGGAA
GAAGGCGGCGGACAGTCGATGAGCATGGGTCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCTTGACGGACGGATGAAAAT
CGACACAAGTGAAGGAAACGGTTTTAAAGCGGATATTGAAATGGAATTGTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(563-632)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

54.156

100

0.547