Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   Q2B68_RS16215 Genome accession   NZ_CP130280
Coordinates   3253104..3253748 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain PM415     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3248104..3258748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS16180 (Q2B68_16180) - 3249289..3249720 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  Q2B68_RS16185 (Q2B68_16185) - 3249720..3250061 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  Q2B68_RS16190 (Q2B68_16190) - 3250054..3251535 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  Q2B68_RS16195 (Q2B68_16195) - 3251541..3252017 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  Q2B68_RS16200 (Q2B68_16200) - 3252017..3252301 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  Q2B68_RS16205 (Q2B68_16205) mnhG 3252285..3252659 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  Q2B68_RS16210 (Q2B68_16210) - 3252699..3253082 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  Q2B68_RS16215 (Q2B68_16215) comA 3253104..3253748 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  Q2B68_RS16220 (Q2B68_16220) comP 3253829..3256120 (-) 2292 WP_274413647.1 histidine kinase Regulator
  Q2B68_RS16225 (Q2B68_16225) comX 3256132..3256296 (-) 165 WP_007613432.1 competence pheromone ComX -
  Q2B68_RS16230 (Q2B68_16230) - 3256296..3257174 (-) 879 WP_231040471.1 polyprenyl synthetase family protein -
  Q2B68_RS16235 (Q2B68_16235) degQ 3257359..3257499 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  Q2B68_RS16240 (Q2B68_16240) - 3257965..3258306 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=857573 Q2B68_RS16215 WP_003152052.1 3253104..3253748(-) (comA) [Bacillus amyloliquefaciens strain PM415]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=857573 Q2B68_RS16215 WP_003152052.1 3253104..3253748(-) (comA) [Bacillus amyloliquefaciens strain PM415]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCACGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864