Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q2B68_RS02000 Genome accession   NZ_CP130280
Coordinates   422760..423713 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417760..428713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS01975 (Q2B68_01975) - 417803..419236 (+) 1434 WP_161620115.1 HAMP domain-containing sensor histidine kinase -
  Q2B68_RS01980 (Q2B68_01980) rapC 419389..420537 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  Q2B68_RS01985 (Q2B68_01985) phrC 420521..420640 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  Q2B68_RS01990 (Q2B68_01990) - 420791..420886 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  Q2B68_RS01995 (Q2B68_01995) - 420981..422345 (-) 1365 WP_014304341.1 aspartate kinase -
  Q2B68_RS02000 (Q2B68_02000) ceuB 422760..423713 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  Q2B68_RS02005 (Q2B68_02005) - 423703..424650 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  Q2B68_RS02010 (Q2B68_02010) - 424644..425402 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  Q2B68_RS02015 (Q2B68_02015) - 425424..426368 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  Q2B68_RS02020 (Q2B68_02020) - 426410..427834 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=857525 Q2B68_RS02000 WP_003156332.1 422760..423713(+) (ceuB) [Bacillus amyloliquefaciens strain PM415]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=857525 Q2B68_RS02000 WP_003156332.1 422760..423713(+) (ceuB) [Bacillus amyloliquefaciens strain PM415]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533