Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   Q2B68_RS01985 Genome accession   NZ_CP130280
Coordinates   420521..420640 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus amyloliquefaciens strain PM415     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 415521..425640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS01970 (Q2B68_01970) - 417133..417816 (+) 684 WP_024084885.1 response regulator transcription factor -
  Q2B68_RS01975 (Q2B68_01975) - 417803..419236 (+) 1434 WP_161620115.1 HAMP domain-containing sensor histidine kinase -
  Q2B68_RS01980 (Q2B68_01980) rapC 419389..420537 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  Q2B68_RS01985 (Q2B68_01985) phrC 420521..420640 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  Q2B68_RS01990 (Q2B68_01990) - 420791..420886 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  Q2B68_RS01995 (Q2B68_01995) - 420981..422345 (-) 1365 WP_014304341.1 aspartate kinase -
  Q2B68_RS02000 (Q2B68_02000) ceuB 422760..423713 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  Q2B68_RS02005 (Q2B68_02005) - 423703..424650 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  Q2B68_RS02010 (Q2B68_02010) - 424644..425402 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=857524 Q2B68_RS01985 WP_003156334.1 420521..420640(+) (phrC) [Bacillus amyloliquefaciens strain PM415]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=857524 Q2B68_RS01985 WP_003156334.1 420521..420640(+) (phrC) [Bacillus amyloliquefaciens strain PM415]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718