Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V8N89_RS12195 Genome accession   NZ_CP147009
Coordinates   2490848..2491477 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain FACU 2024     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2485848..2496477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N89_RS12175 ycbZ 2486249..2488009 (-) 1761 WP_000156518.1 Lon protease family protein -
  V8N89_RS12180 matP 2488195..2488647 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V8N89_RS12185 ompA 2488723..2489763 (-) 1041 WP_000750416.1 porin OmpA -
  V8N89_RS12190 sulA 2490120..2490629 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  V8N89_RS12195 sxy/tfoX 2490848..2491477 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V8N89_RS12200 yccS 2491440..2493602 (-) 2163 WP_000875061.1 YccS family putative transporter -
  V8N89_RS12205 yccF 2493612..2494058 (-) 447 WP_001261235.1 YccF domain-containing protein -
  V8N89_RS12210 helD 2494181..2496235 (+) 2055 WP_170896608.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=857523 V8N89_RS12195 WP_000839153.1 2490848..2491477(+) (sxy/tfoX) [Escherichia coli strain FACU 2024]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=857523 V8N89_RS12195 WP_000839153.1 2490848..2491477(+) (sxy/tfoX) [Escherichia coli strain FACU 2024]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1