Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STYK_RS06850 Genome accession   NZ_AP024523
Coordinates   1327108..1329090 (-) Length   660 a.a.
NCBI ID   WP_261804759.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1322108..1334090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS06825 (STYK_12920) - 1322335..1323174 (-) 840 WP_261804754.1 amino acid ABC transporter substrate-binding protein -
  STYK_RS06830 (STYK_12930) - 1323184..1323813 (-) 630 WP_261804755.1 amino acid ABC transporter ATP-binding protein -
  STYK_RS06835 (STYK_12940) - 1323823..1324464 (-) 642 WP_261804756.1 amino acid ABC transporter permease -
  STYK_RS06840 (STYK_12950) - 1324605..1325834 (-) 1230 WP_261804757.1 tetratricopeptide repeat protein -
  STYK_RS06845 (STYK_12960) - 1325824..1326990 (-) 1167 WP_261804758.1 AI-2E family transporter -
  STYK_RS06850 (STYK_12970) amiA3 1327108..1329090 (-) 1983 WP_261804759.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS06855 (STYK_12980) - 1329262..1330275 (+) 1014 WP_261804760.1 lactonase family protein -
  STYK_RS06860 (STYK_12990) - 1330322..1330741 (-) 420 WP_000068041.1 F0F1 ATP synthase subunit epsilon -
  STYK_RS06865 (STYK_13000) atpD 1330752..1332158 (-) 1407 WP_164226735.1 F0F1 ATP synthase subunit beta -
  STYK_RS06870 (STYK_13010) - 1332244..1333122 (-) 879 WP_261804761.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72786.99 Da        Isoelectric Point: 4.9195

>NTDB_id=85751 STYK_RS06850 WP_261804759.1 1327108..1329090(-) (amiA3) [Streptococcus toyakuensis strain TP1632]
MKKRVFLAAGVAVLSAAVLAACSSGNANKEANKPVTYAYVFSSDPSTLDYTVSGNVSTKQVTGNVIDGLLENDQYGNLVP
SVAEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNGKTTDFSTV
GVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVNEDFLASKGDDFGKPTDVTSILYNGPYLLKGLTSKSSIEMTKNQNYW
DKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYISTNIDRVNYNHTA
KTSDAEKTSTKKALLNKDFRQALTFAVDRKAGISQVFGDEVGPRKLRTSFTPPTFVQVGDQTFGQVTKTELDKLDNVWKD
VSLDDAQDSLHNVDKAKAKFESAKKTLQADGVQFPIHLDLPISSSNPDFIRQVQSYKQSIEEALGSENVVVDIQQVSNDE
LGSMTTLATSNANTDWDINAVSGWTPDFADPSTYLDVFDPTSGPSLLSALGVAPGTDNPVIKTVGLDKYKELIDDANSEK
TDLQKRYTKYAKAQAWLSDSALVTPVYSDGAQMLVTKVVPGSGAGGWVGDKTSENSYKYLKIQDKIVTTKEMDEFRKKFA
DEKAKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=85751 STYK_RS06850 WP_261804759.1 1327108..1329090(-) (amiA3) [Streptococcus toyakuensis strain TP1632]
ATGAAAAAACGTGTTTTCCTAGCAGCAGGAGTTGCTGTACTTTCGGCTGCTGTCCTAGCAGCGTGTTCATCTGGTAATGC
TAATAAAGAAGCAAATAAGCCAGTTACTTATGCCTATGTATTTTCATCAGATCCTTCGACTCTGGATTATACAGTTTCAG
GAAATGTCAGCACTAAACAGGTCACAGGTAACGTTATTGACGGTTTACTTGAAAATGACCAATATGGAAATCTGGTTCCA
TCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAATCCGTCAGGGTGTAAAATGGTATAC
CAACGAGGGGGAAGAGTATGGTGAAGTCAAGGCTCAAGACTTTGTAACTGGTCTGAAACACGCAGCAGATAAGAAATCAC
AGGCTCTTTATCTCGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGGAAAACAACGGATTTTTCTACTGTT
GGTGTAAAAGCAACTGACGATTATACTGTTGTTTATACTTTGAATCATCCAGAGTCTTTCTGGAATTCAAAAACAACAAT
GGGAGTCCTTGCACCAGTCAATGAAGACTTTTTAGCTTCTAAAGGAGATGACTTTGGTAAACCAACTGATGTAACGAGTA
TTCTATACAATGGGCCTTATCTCCTCAAAGGTCTTACATCTAAGTCTTCTATCGAAATGACCAAAAATCAAAACTACTGG
GATAAACAAAATGTCTTTATTGATGATATCAAGTTATCCTTCTTTGATGGTCAAGATGCAGACTCTCTAGGTCGCGGTTT
TGATGAGGGACACTATCCAGCTGCACCACTCTTTAAAAACTCTGCTAACTATGAACGTCTAAAAGAAAAATACAAGGATA
ATATTGTGTATGGTCAACAGCGTGGAGGAGTTTTTTATATCTCAACCAATATCGATCGTGTAAATTACAATCACACTGCT
AAAACAAGTGATGCAGAAAAAACATCTACTAAGAAAGCCTTGTTAAACAAAGATTTCCGTCAAGCCTTGACTTTTGCGGT
AGATCGTAAAGCAGGGATCTCTCAAGTATTTGGTGATGAAGTAGGACCTCGTAAGTTACGGACAAGTTTCACTCCTCCAA
CATTTGTTCAAGTAGGAGATCAAACATTTGGTCAAGTTACTAAGACAGAATTGGATAAATTGGATAACGTCTGGAAAGAT
GTTAGTCTTGATGATGCCCAAGATTCACTTCATAATGTAGACAAGGCTAAGGCTAAGTTTGAATCTGCTAAGAAAACTCT
GCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATTTGCCAATTTCTTCATCAAATCCAGATTTTATTCGTCAGGTTC
AGTCTTATAAACAATCCATTGAGGAAGCCTTAGGCTCTGAAAATGTAGTTGTTGATATTCAACAAGTTTCTAATGACGAA
TTGGGAAGTATGACTACTCTAGCTACTTCCAATGCAAATACTGACTGGGATATTAATGCAGTCAGTGGTTGGACTCCAGA
CTTTGCAGATCCATCGACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTAAGTGCTCTTGGTGTGGCAC
CAGGAACAGACAATCCAGTTATTAAAACAGTTGGATTGGATAAATACAAAGAACTGATTGATGATGCAAATAGTGAGAAA
ACAGACCTTCAAAAACGTTATACCAAATATGCTAAGGCCCAAGCTTGGTTGTCAGATAGTGCACTTGTTACTCCAGTATA
CTCTGATGGTGCTCAAATGCTAGTGACGAAAGTGGTTCCTGGCAGTGGTGCCGGTGGCTGGGTAGGTGACAAGACTAGTG
AAAATAGCTACAAATATCTGAAAATTCAAGATAAGATTGTCACTACTAAAGAAATGGATGAGTTCCGCAAGAAATTTGCT
GATGAAAAAGCTAAATCCAATGCTGATTATCAGAAAAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.287

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

54.532

100

0.547
  amiA Streptococcus salivarius strain HSISS4

54.463

100

0.545

Multiple sequence alignment