Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   V4Q90_RS11480 Genome accession   NZ_CP146990
Coordinates   2579244..2581316 (+) Length   690 a.a.
NCBI ID   WP_011214279.1    Uniprot ID   -
Organism   Legionella pneumophila strain LEG1116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2574244..2586316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q90_RS11460 (V4Q90_11430) folB 2575093..2575431 (+) 339 WP_011214275.1 dihydroneopterin aldolase -
  V4Q90_RS11465 (V4Q90_11435) - 2575471..2576166 (-) 696 WP_011214276.1 SPOR domain-containing protein -
  V4Q90_RS11470 (V4Q90_11440) argS 2576166..2577935 (-) 1770 WP_011214277.1 arginine--tRNA ligase -
  V4Q90_RS11475 (V4Q90_11445) - 2578039..2579097 (-) 1059 WP_011214278.1 AI-2E family transporter -
  V4Q90_RS11480 (V4Q90_11450) recG 2579244..2581316 (+) 2073 WP_011214279.1 ATP-dependent DNA helicase RecG Machinery gene
  V4Q90_RS11485 (V4Q90_11455) - 2581838..2582911 (-) 1074 WP_011214280.1 hypothetical protein -
  V4Q90_RS11490 (V4Q90_11460) - 2583260..2584402 (+) 1143 WP_011214281.1 cation diffusion facilitator family transporter -
  V4Q90_RS11495 (V4Q90_11465) - 2584518..2585276 (+) 759 WP_011214282.1 ZIP family metal transporter -
  V4Q90_RS11500 (V4Q90_11470) - 2585269..2585871 (+) 603 WP_011214283.1 nucleoside triphosphate pyrophosphatase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 77966.19 Da        Isoelectric Point: 8.0458

>NTDB_id=857455 V4Q90_RS11480 WP_011214279.1 2579244..2581316(+) (recG) [Legionella pneumophila strain LEG1116]
MLSNSCEYLTGVGPTIAAKLAKCGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCKTEIKYGKRMMLNCYV
EDKTGVVKLRFFHFNKQQIQALNNSTMIRAFGEVRGFNNQLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQTRLRQ
LVKIALEQSEHELHQLEWMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQS
RSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAF
MAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKATERKNALAALQDNSCQLIVGTHALFQEQVEFACLGLVIIDEQHRF
GVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIANG
KQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNAS
LMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGF
RQFKIANLQRDKTLFTILRPIAKQLVLEKTAIARQITQRWLGNFEQFLQS

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=857455 V4Q90_RS11480 WP_011214279.1 2579244..2581316(+) (recG) [Legionella pneumophila strain LEG1116]
GTGCTGAGTAACTCTTGTGAATATTTAACTGGCGTCGGCCCAACCATTGCAGCAAAACTTGCTAAATGTGGAATTTTCAC
GATACAAGACTTGCTTTTCCACTTGCCTTATAAATATCAAGACAGAACCAGGATAACACCAATTCAGGATTTACGCTCCA
ATGAATGGTGTGTTATCGCGGGGCATGTATGCAAAACTGAAATAAAATACGGCAAAAGGATGATGTTGAATTGCTATGTG
GAAGATAAAACAGGAGTAGTTAAGCTTCGTTTTTTTCATTTCAATAAGCAGCAAATTCAGGCTTTGAATAATAGCACCAT
GATTCGAGCTTTTGGCGAAGTCCGCGGATTTAACAACCAATTGGAGATGATTCATCCAGAATATCAATTAATTGACCAAG
AATCAGATTTCCACGTGGAAGAAACGCTTACGCCAATTTATCCATCGACTCAAGGCTTGACTCAAACCCGATTAAGGCAG
TTAGTTAAAATAGCCCTGGAACAATCTGAACACGAACTTCATCAATTGGAATGGATGAGTGAAAAACAATTACAGGAAAA
TAATTTTTATGATTTGGGCGAAGCCATTAAATTACTACATAACCCTCCACCAGATATCTCCCTCTCCAACCTCGAAGCCG
GCGAACATCCTGCTCTCAAGCGGTTAATATTTGATGAATTACTGGCACAGCAGCTCAGTATGCAATTTGCAAGACAGTCA
CGCAGCAAACTCCAAGCTCCCGCTATACTTTTCGATAATGCAATTCATAAACGTTTTATCGAATCATTGCCATTCAGTCT
TACAAACGCACAACAACGTGTTTTTAAAGAAATCAGCGTTGATTTAACTCAAAGCAAACCCATGCTTCGTTTGCTGCAAG
GAGATGTTGGGGCGGGTAAAACCATTATCGCGGCACTAGCCGCCCTTCAAGCCATTTCACAAGGATTTCAGGTTGCTTTT
ATGGCACCAACCGATTTATTAAGTGAACAACATACAAATAGCCTCAGTAAATGGTTAGAACCTATCGGTATTAATGTATT
AAGACTGAGCGGTAAAATGAAAGCCACAGAACGAAAAAATGCGCTTGCAGCCCTGCAGGACAACAGCTGTCAGCTCATTG
TTGGAACTCATGCTTTATTTCAGGAGCAAGTCGAATTCGCTTGTTTGGGTTTGGTCATTATTGACGAACAACACCGATTT
GGAGTAGAACAACGGCTCCTTCTGCAACAAAAAGGGCAATTAAACCAATTAATCCCTCATCAATTATTAATGACAGCCAC
CCCTATTCCAAGAACCCTGTCAATGTCTCATTTTGCTCATTTGGATATATCGGTCATCGATGAACTACCACCTGGACGTA
TGCCAATTACAACAGCGGTATTGAACCAGGATAAGCGTGAACTCATTATCGAACGTTTGCAAGCAGCAATCGCCAACGGC
AAACAAGCTTACTGGGTCTGTACCCTTATAGAAGAATCTGAAAAATTACAATGCATAGCAGCAACAGATACCTCAAAAAA
ATTACAAGAACAGCTCTCTTTCGCGCGTGTTGGTCTTGTTCATGGGAGAATGAAAGCGCTTGAAAAAGAAGCTACTATGG
CGGCCTTTAAACAAGGCGAGATTGATTTATTGGTGGCAACTACAGTTATTGAAGTTGGTGTAGATGTTCCTAATGCCAGT
TTAATGATCATTGAAAATGCGGAGCGACTTGGTTTATCGCAGTTACATCAATTACGCGGGCGCGTCGGCAGAGGTAATAA
TCAATCTCATTGTCTATTACTTTATCAATCTCCTCTATCACAGCAAGGTGCTGAACGTCTCAAGATCATGCGTTCAACAA
CAGACGGTTTTCTAATCTCCGAAAAGGATTTGGAGTTAAGAGGCTCAGGAGAAATATTAGGAACCAGACAGACTGGCTTT
AGACAATTTAAAATAGCTAACTTACAACGCGATAAAACCCTCTTCACTATTTTACGTCCAATTGCAAAACAACTGGTGCT
GGAAAAAACAGCAATCGCCAGACAAATTACACAACGATGGCTGGGCAATTTTGAACAATTTTTGCAAAGTTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(613-668)

Helicase conserved C-terminal domain (Helicase_C)

(469-586)

RecG wedge domain (RecG_wedge)

(7-164)

DEAD/DEAH box helicase (DEAD)

(270-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.923

97.681

0.468
  recG Bacillus subtilis subsp. subtilis str. 168

38.724

97.681

0.378
  recG/mmsA Streptococcus pneumoniae R6

38.681

96.667

0.374
  recG/mmsA Streptococcus pneumoniae R36A

38.681

96.667

0.374