Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STYK_RS04430 Genome accession   NZ_AP024523
Coordinates   851238..853205 (+) Length   655 a.a.
NCBI ID   WP_261805316.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 846238..858205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS04415 - 846799..847533 (+) 735 WP_173233835.1 CPBP family intramembrane glutamic endopeptidase -
  STYK_RS04420 (STYK_08180) parC 847586..850057 (+) 2472 WP_261805314.1 DNA topoisomerase IV subunit A -
  STYK_RS04425 (STYK_08190) - 850193..851215 (+) 1023 WP_261805315.1 branched-chain amino acid aminotransferase -
  STYK_RS04430 (STYK_08200) amiA3 851238..853205 (+) 1968 WP_261805316.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS04435 (STYK_08210) - 853304..853534 (+) 231 WP_000037113.1 DUF2969 domain-containing protein -
  STYK_RS04450 (STYK_08220) rpsA 853907..855109 (+) 1203 WP_001001632.1 30S ribosomal protein S1 -
  STYK_RS04455 (STYK_08230) - 855195..855692 (+) 498 WP_084927521.1 GAF domain-containing protein -
  STYK_RS04460 (STYK_08240) dnaX 855692..857347 (+) 1656 WP_261805317.1 DNA polymerase III subunit gamma/tau -
  STYK_RS04465 (STYK_08250) - 857375..857569 (+) 195 WP_001081602.1 DUF3272 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72718.31 Da        Isoelectric Point: 5.1322

>NTDB_id=85742 STYK_RS04430 WP_261805316.1 851238..853205(+) (amiA3) [Streptococcus toyakuensis strain TP1632]
MKSKKWLLTAGVVLSTTALLAACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKATFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=85742 STYK_RS04430 WP_261805316.1 851238..853205(+) (amiA3) [Streptococcus toyakuensis strain TP1632]
ATGAAATCGAAAAAGTGGCTTTTAACAGCAGGAGTGGTCCTGAGCACAACAGCTCTATTAGCGGCTTGTGGAAAGGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCTGCGTCTTTGGATTATAGTATAGCGACTC
GTACATCTACAACAGATGTCATCGGGAACGTGGTTGATGGATTGATGGAAAATGACCAATACGGAAATGTTATTCCTTCC
TTGGCTGAAGATTGGTCTGTCTCAAAAGATGGTTTGACTTATACTTATAAACTTCGTAAAGGAGTTAAATGGTACACTTC
AGAAGGTGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTAACAGGATTGAAACACGTAGCTGACGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATTAAGGGCTTGGATGCCTACATGACTGGTGAGACCAATGATTTCTCTACAGTTGGT
GTCAAGGCCTTGGACGATTACACAGTTGAATATACCCTAAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACCACAGC
GACGATGTTGCCTGTAAATGAAGAGTTTTTGAAGGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGGATTCTCT
ACAATGGTCCTTATATCCTGAAGACCTTGACGTCTAAATCGTTGATCGAATACGAGAAAAACCCAAACTACTGGGATAAA
GAAAAGGTAAAAATCGAGAAGATCAAATTGACTTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGTTTCTCTTC
TGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTGGAACAATACGGAGATAAAATAA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATACAATAAAACTGCGAAAACA
AGTGAAGAGCAAAAGACTTCTACTAAAGAAGCTATGCTGAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
TCATTCATATGCTGCTCAGCTAAATGGTGAAGACGGTGCGGACAAGATTATTCGTAACAGTCTCGTTCCTGACAACTTTG
TACAAGCAGGCGGTAAGAATTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGCAACCTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACTTTCCCAATTCACTTGGATGTCCCAGTTGAACAAACAGATACTATCGCCGTTCAACAAAGTAACTCTT
TCAAACAGTCAATCGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGACGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGTTATCAAGA
CCCAGCCTCTTACTTGAATATCATGGATCCTAAATCAGGGTCTGCCATGAAACACCTTGGTATTACGAAAGGAAAAGATA
AGGATGTTGTAGCGAAACTTGGTTTGGACCAATATAAGAAATTATTGGATGATGCCGATTCAGAAACTACAAATCTTGAA
GAACGCTATGAAAAATATGCCAAAGCTCAAGCTTGGTTGACAGATAGTTCGTTATTGATGCCAACAGCCTCATCTGGTGG
TTCTCCAGTTGTAAGTAATGTCGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGTGACCCGTATATCTTTA
AAGGAATGAAATTGCAAAAAGATATCGTTACAACCAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAATGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.03

100

0.534
  amiA Streptococcus salivarius strain HSISS4

52.584

100

0.528
  amiA3 Streptococcus thermophilus LMG 18311

52.424

100

0.528

Multiple sequence alignment