Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q2T42_RS01475 Genome accession   NZ_CP130144
Coordinates   321823..322203 (-) Length   126 a.a.
NCBI ID   WP_017288634.1    Uniprot ID   -
Organism   Leptolyngbya boryana CZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316823..327203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T42_RS01460 (Q2T42_01450) - 319408..319869 (-) 462 WP_190653661.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  Q2T42_RS01465 (Q2T42_01455) - 320258..321178 (-) 921 WP_316427632.1 tetratricopeptide repeat protein -
  Q2T42_RS01470 (Q2T42_01460) - 321358..321663 (-) 306 WP_026148689.1 hypothetical protein -
  Q2T42_RS01475 (Q2T42_01465) pilH 321823..322203 (-) 381 WP_017288634.1 PleD family two-component system response regulator Machinery gene
  Q2T42_RS01480 (Q2T42_01470) - 322847..327052 (+) 4206 WP_316427633.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14101.24 Da        Isoelectric Point: 4.6436

>NTDB_id=857335 Q2T42_RS01475 WP_017288634.1 321823..322203(-) (pilH) [Leptolyngbya boryana CZ1]
MSWVLVVDDSAVVRELISTELRHQGFDVAVANDGVDAISVIQKHPPDLVITDVVMPRMNGYELCRWIKSDPRSQNIPVMI
CSIKGEDFDRYWGMKQGADAYMIKPCPPAEMLSAIDYLLSRSATSN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=857335 Q2T42_RS01475 WP_017288634.1 321823..322203(-) (pilH) [Leptolyngbya boryana CZ1]
ATGAGTTGGGTTTTAGTCGTGGACGATAGCGCGGTTGTGCGAGAACTCATTTCTACCGAATTGCGGCATCAAGGATTTGA
TGTTGCCGTTGCGAATGATGGTGTTGATGCCATATCCGTCATTCAAAAACATCCACCCGACTTAGTCATTACCGATGTGG
TCATGCCACGGATGAATGGCTATGAACTTTGCCGTTGGATCAAAAGCGATCCGCGCAGCCAGAATATTCCCGTCATGATC
TGTTCGATCAAAGGTGAAGACTTCGATCGCTATTGGGGAATGAAACAAGGCGCAGATGCCTACATGATCAAACCCTGTCC
ACCTGCTGAGATGTTAAGTGCGATCGACTATTTACTGTCTCGCTCAGCCACGTCAAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.303

94.444

0.532
  pilG Acinetobacter baumannii strain A118

41.964

88.889

0.373
  pilL-C Synechocystis sp. PCC 6803

38.983

93.651

0.365