Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STYK_RS01430 Genome accession   NZ_AP024523
Coordinates   274017..275981 (+) Length   654 a.a.
NCBI ID   WP_261805105.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 269017..280981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01400 (STYK_02440) - 269741..271132 (+) 1392 WP_173226005.1 Cof-type HAD-IIB family hydrolase -
  STYK_RS01405 - 271129..271251 (+) 123 WP_031222600.1 hypothetical protein -
  STYK_RS01410 (STYK_02450) - 271324..271776 (-) 453 WP_173226007.1 universal stress protein -
  STYK_RS01415 (STYK_02460) - 271937..272230 (+) 294 WP_173226009.1 hypothetical protein -
  STYK_RS01420 (STYK_02470) - 272387..273601 (+) 1215 WP_261805104.1 pyridoxal phosphate-dependent aminotransferase -
  STYK_RS01425 (STYK_02480) rpmH 273746..273880 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  STYK_RS01430 (STYK_02490) amiA 274017..275981 (+) 1965 WP_261805105.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS01435 (STYK_02500) - 276004..276195 (-) 192 WP_020903077.1 hypothetical protein -
  STYK_RS01440 (STYK_02510) - 276270..278114 (-) 1845 WP_261187521.1 APC family permease -
  STYK_RS01445 (STYK_02520) - 278272..279045 (+) 774 WP_049543701.1 TatD family hydrolase -
  STYK_RS01450 (STYK_02530) rnmV 279045..279605 (+) 561 WP_049543702.1 ribonuclease M5 -
  STYK_RS01455 (STYK_02540) - 279677..280588 (+) 912 WP_000904842.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73068.24 Da        Isoelectric Point: 4.7450

>NTDB_id=85720 STYK_RS01430 WP_261805105.1 274017..275981(+) (amiA) [Streptococcus toyakuensis strain TP1632]
MKKSKVMLFGAMALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGRTSDFGTVGV
KAVDDYTLQYTLIQPETYWNSKTTASILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFTSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFLNPDKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKENVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKDKIGLADYKKLLDQADAEITDTQA
RYEKYAEAQAWLTDSALFLPVQSGGANPIFRKTVPFTGPFSFVGHKGNADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=85720 STYK_RS01430 WP_261805105.1 274017..275981(+) (amiA) [Streptococcus toyakuensis strain TP1632]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCAAGTAATGCAGACAAGACTTACTCTTATATCTTTGTTAGCAACCCAGATACCTTGGATTATATTACCTCTACACGAG
ACTCAACATCTAGTATCACAACCAACTTGATTGATGGGTTGTTGGAAAATGACCAGTATGGTAATCTCATCCCATCTATG
GCTGAGTCATGGACAGTGTCAAAAGATGGTTTGACCTACACTTATAAAATCCGTCAGGGGGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCAGATGTAACGGCTCATGACTTTGTGACTGGTCTCAAGTATGCGGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTACAAGACTCTATCAAGGGTCTAGCAGACTATGTTGAAGGGAGAACATCTGATTTTGGAACTGTTGGTGTT
AAGGCAGTGGATGATTACACACTACAATACACCCTCATCCAACCTGAAACTTATTGGAACTCTAAAACAACAGCAAGTAT
TCTTAGTCCTGTAAATGAAGCCTTCTTGAAGTCTAAGGGAGATGACTTTGGAAGTGTGACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAGTCCTTCACATCCAAATCTTTGATTGAATTTGATAAAAATCCTAATTACTGGGATAAGGAC
AATGTTAAAATCGAGAAAGTGAAGCTCTCTTTCTTTGACGGATCTGACCAAGATAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACAGATGGTCGTATCTTCCCAACAAGTTCAGTCTTTGCTGAGCTTAAGAAGGGAAATGAGGACAAGATTACCT
ATACACCACAAAACTCAGTTACTTTCTATTATCTTTTCAACGTCAATCGTCAAAGCTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACAGATTCACGCGCAGCCATGCAAAATAAAGATTTCCGTCAGGCTATCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCGCAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACGGTTACACCAAGTAACTTTGTCC
AAGTTGGTGATAAGAACTTTGGTGACATTGTCAATGAAAAAATTGTCAACTACGGTAAAGATTGGGCAAATATTAACCTA
AACGATGGTAAGCAAGCCTTCTTGAACCCTGACAAGGCCAAAGAGAAATTTGCGAAGGCCAAAGAAAGCCTGCAAGCACA
GGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAGTTGGATGTGCAACAGGCTGGATCTTTCA
AACAAACAGTGGAAGAAACCCTTGGTAAGGAGAATGTGGTTATCGATGTTATCCAACTTTCTCCGGATGAAAAAGACCAG
GCAACTTACTTTGCAGATACAGCAGAACAAAAAGACTACGATATCGACATCTCAGGATGGGGAGGAGACTACTCAGATCC
TAAGACTTACCTAGCGATCCTTGATCCAGAGACAGGCTCTCAGTTGAAAAACATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTCAAGGACAAGATTGGTCTTGCTGACTACAAGAAACTCTTGGATCAGGCTGATGCGGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGAAGCCCAAGCTTGGTTGACAGATAGTGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCTAA
CCCAATCTTCCGTAAGACTGTACCGTTTACAGGACCATTCTCATTCGTTGGTCATAAGGGAAATGCGGACAACTACAAAT
ATGTTGAATTGCAAAAAGAGCCAGTCACTGCTAAACAGTACCAAGAACTCTATGAAAAATGGCTGAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCACATTCAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.015

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.711

100

0.55

Multiple sequence alignment