Detailed information NTG0856984

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q1W70_RS14280
• Genome accession: NZ_CP130043
• Coordinates: 3058664..3059536 (-)
• Length: 290 a.a.
• NCBI ID: WP_182342365.1
• Uniprot ID: -
• Organism: Pseudomonas kielensis strain ZE23JCel16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3053664..3064536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q1W70_RS14245 (Q1W70_14245)	-	3053839..3055050 (+)	1212	WP_302097461.1	benzoate/H(+) symporter BenE family transporter	-
Q1W70_RS14250 (Q1W70_14250)	-	3055152..3056420 (+)	1269	WP_182342367.1	OprD family porin	-
Q1W70_RS14255 (Q1W70_14255)	-	3056415..3056654 (-)	240	WP_166593124.1	DUF2790 domain-containing protein	-
Q1W70_RS14260 (Q1W70_14260)	-	3056885..3057571 (+)	687	WP_166593125.1	energy-coupling factor ABC transporter permease	-
Q1W70_RS14265 (Q1W70_14265)	-	3057635..3057850 (+)	216	WP_166593126.1	hypothetical protein	-
Q1W70_RS14270 (Q1W70_14270)	yacG	3057847..3058047 (-)	201	WP_095166544.1	DNA gyrase inhibitor YacG	-
Q1W70_RS14275 (Q1W70_14275)	coaE	3058044..3058667 (-)	624	WP_166593127.1	dephospho-CoA kinase	-
Q1W70_RS14280 (Q1W70_14280)	pilD	3058664..3059536 (-)	873	WP_182342365.1	A24 family peptidase	Machinery gene
Q1W70_RS14285 (Q1W70_14285)	pilC	3059539..3060756 (-)	1218	WP_302097464.1	type II secretion system F family protein	Machinery gene
Q1W70_RS14290 (Q1W70_14290)	-	3060994..3061410 (+)	417	WP_166592405.1	pilin	-
Q1W70_RS14295 (Q1W70_14295)	-	3061604..3061960 (+)	357	WP_302097465.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32405.67 Da
• Isoelectric Point: 8.3831

>NTDB_id=856984 Q1W70_RS14280 WP_182342365.1 3058664..3059536(-) (pilD) [Pseudomonas kielensis strain ZE23JCel16]
MPLSEFLTSYPTAFVVLALGLGLVVGSFLNVLVWRLPKMLARDWRQQARDILELPAEPPGPTYNLMLPHSHCPHCRHPLR
AWENIPLLSYLMLRGRCARCKTPISARYPLVELSCALLCGFIAWHLGFGWQTAGLLVLSWGLLALCLIDADHQLLPDVLV
MPLLWLGVIVNAFELFVPLQDAVWGAVAGYLSLWTVYWLFRLITGKEGIGHGDFKLLAMLGAWGGWQILPLTILLASLVG
AVSGLLWLRWKRAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLQ

Nucleotide

• Length: 873 bp

>NTDB_id=856984 Q1W70_RS14280 WP_182342365.1 3058664..3059536(-) (pilD) [Pseudomonas kielensis strain ZE23JCel16]
ATGCCCTTGAGTGAATTTCTCACCAGCTACCCGACGGCCTTCGTGGTCCTGGCCCTCGGGCTGGGGCTGGTGGTCGGCAG
CTTTCTCAACGTCCTGGTCTGGCGCCTGCCGAAGATGCTGGCACGGGATTGGCGCCAGCAGGCCCGGGACATCCTCGAAC
TACCCGCCGAGCCCCCCGGCCCCACCTACAACCTGATGCTGCCCCACTCCCATTGCCCCCACTGCCGCCATCCTCTGCGT
GCCTGGGAGAACATTCCACTGCTCAGCTACCTGATGCTGCGTGGACGGTGCGCACGTTGCAAAACCCCCATCAGTGCCCG
TTACCCGCTGGTCGAGCTCAGTTGCGCGCTGCTCTGCGGGTTCATCGCCTGGCACCTGGGCTTTGGCTGGCAGACCGCGG
GGCTGCTGGTGTTGAGCTGGGGCCTGTTGGCCCTGTGCCTGATCGACGCAGACCATCAGTTGCTGCCCGACGTACTGGTC
ATGCCGCTGCTGTGGCTGGGGGTGATCGTCAACGCGTTCGAGCTGTTCGTGCCACTGCAGGACGCCGTGTGGGGCGCCGT
GGCCGGCTACCTGAGCTTGTGGACGGTGTATTGGCTGTTCAGGTTGATCACCGGCAAGGAAGGCATCGGCCATGGCGACT
TCAAGCTCCTGGCGATGCTGGGGGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGATCCTGCTGGCCTCGCTGGTGGGG
GCCGTCAGCGGGCTGCTCTGGCTGCGCTGGAAACGGGCGAAAACCTCGACGCCGATCCCCTTCGGTCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.255	97.241	0.528
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Neisseria gonorrhoeae MS11	51.163	88.966	0.455
pilD	Acinetobacter baumannii D1279779	45.583	97.586	0.445
pilD	Acinetobacter nosocomialis M2	45.583	97.586	0.445