Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Q1Z72_RS11005 Genome accession   NZ_CP129981
Coordinates   2292599..2293234 (+) Length   211 a.a.
NCBI ID   WP_162484877.1    Uniprot ID   -
Organism   Pseudomonas qingdaonensis strain L1712hy     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2287599..2298234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1Z72_RS10985 (Q1Z72_10985) - 2287958..2288890 (+) 933 WP_043862894.1 ABC transporter ATP-binding protein -
  Q1Z72_RS10990 (Q1Z72_10990) - 2288887..2289666 (+) 780 WP_058541067.1 ABC transporter permease -
  Q1Z72_RS10995 (Q1Z72_10995) - 2289634..2290173 (-) 540 WP_043862892.1 DUF2062 domain-containing protein -
  Q1Z72_RS11000 (Q1Z72_11000) comA 2290314..2292536 (+) 2223 WP_235593688.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q1Z72_RS11005 (Q1Z72_11005) exbB 2292599..2293234 (+) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q1Z72_RS11010 (Q1Z72_11010) - 2293231..2293662 (+) 432 WP_054915817.1 biopolymer transporter ExbD -
  Q1Z72_RS11015 (Q1Z72_11015) lpxK 2293662..2294672 (+) 1011 WP_058541069.1 tetraacyldisaccharide 4'-kinase -
  Q1Z72_RS11020 (Q1Z72_11020) - 2294710..2294895 (+) 186 WP_003247142.1 Trm112 family protein -
  Q1Z72_RS11025 (Q1Z72_11025) kdsB 2294892..2295656 (+) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q1Z72_RS11030 (Q1Z72_11030) - 2295656..2296120 (+) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  Q1Z72_RS11035 (Q1Z72_11035) murB 2296117..2297136 (+) 1020 WP_043862886.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.00 Da        Isoelectric Point: 7.3618

>NTDB_id=856845 Q1Z72_RS11005 WP_162484877.1 2292599..2293234(+) (exbB) [Pseudomonas qingdaonensis strain L1712hy]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLTSEKLKTLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=856845 Q1Z72_RS11005 WP_162484877.1 2292599..2293234(+) (exbB) [Pseudomonas qingdaonensis strain L1712hy]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTCACCAGCGAGAAGCTCAAGACCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTGGCCGCAGGCCTGGCCAAC
TCCCGCCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGTGTCATCCACGAGCTGGAGCGCTACAT
CAACGCACTGGGCACCATCGCGGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCCTCGGTATTGGCGGGGGGGATCTCCAAGGCGTTGATCACCACCGCA
GCCGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTCCAGGGGGACCGTGATGTCGACCTGAGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858