Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q1Z72_RS11000 Genome accession   NZ_CP129981
Coordinates   2290314..2292536 (+) Length   740 a.a.
NCBI ID   WP_235593688.1    Uniprot ID   -
Organism   Pseudomonas qingdaonensis strain L1712hy     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2285314..2297536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1Z72_RS10980 (Q1Z72_10980) - 2287190..2287813 (+) 624 WP_058541066.1 glutathione S-transferase -
  Q1Z72_RS10985 (Q1Z72_10985) - 2287958..2288890 (+) 933 WP_043862894.1 ABC transporter ATP-binding protein -
  Q1Z72_RS10990 (Q1Z72_10990) - 2288887..2289666 (+) 780 WP_058541067.1 ABC transporter permease -
  Q1Z72_RS10995 (Q1Z72_10995) - 2289634..2290173 (-) 540 WP_043862892.1 DUF2062 domain-containing protein -
  Q1Z72_RS11000 (Q1Z72_11000) comA 2290314..2292536 (+) 2223 WP_235593688.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q1Z72_RS11005 (Q1Z72_11005) exbB 2292599..2293234 (+) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q1Z72_RS11010 (Q1Z72_11010) - 2293231..2293662 (+) 432 WP_054915817.1 biopolymer transporter ExbD -
  Q1Z72_RS11015 (Q1Z72_11015) lpxK 2293662..2294672 (+) 1011 WP_058541069.1 tetraacyldisaccharide 4'-kinase -
  Q1Z72_RS11020 (Q1Z72_11020) - 2294710..2294895 (+) 186 WP_003247142.1 Trm112 family protein -
  Q1Z72_RS11025 (Q1Z72_11025) kdsB 2294892..2295656 (+) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q1Z72_RS11030 (Q1Z72_11030) - 2295656..2296120 (+) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  Q1Z72_RS11035 (Q1Z72_11035) murB 2296117..2297136 (+) 1020 WP_043862886.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79735.13 Da        Isoelectric Point: 11.0338

>NTDB_id=856844 Q1Z72_RS11000 WP_235593688.1 2290314..2292536(+) (comA) [Pseudomonas qingdaonensis strain L1712hy]
MRTRMLALALGLLALNVLPALPSVGWLWGIGMTGMLCLVCRWAVPGLFLLGFAWACCSAQWALDDRLRPELEGRTLWLEG
RVVGLAQQGPHSVRFELAEASSRRAQLPQRLSLSWFGGPPVNSGERWRLAVQLQRPSGLLNPHGPDQEAAMLARRIGATG
RVRAGERLAPASHAWRDSVRQRLLGAQAHGREGALAALVLGDGGALAQQDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARVGAWPRALPWLPWACGLAFAAALAYGLMAGFQVPVRRACIMLAVVLLWRLRFRHLGAWIPLLLALNGVLLVEPL
ASLQPGFWLSFAAVAVLVYVFGGRLGAWNPWLAWGRAQWLIAIGLLPVLLALGLPISLSAPLANLVAVPWVSIAVLPLAL
AGTLLQGLPLLGEALLWLAGGSLAALFWTLAQVAHWQPAWTPVALPIWAWLMVGGGAVLLLLPGGLPMRVLGWPLLLLAG
CAPRNEIAHGQLEVWQLDVGQGQAFVLRTRHHAMLYDAGPATRGSDLGERVVVPTLRKLGVRELDLALISHAHADHAGGA
LAVQRSVPLVRVVGGDPDELPGQLQAQACASGEQWQWDGVLFSLWRWQQAGDSNQRSCVLHVDAGGETLLLTGDIDAQAE
RAWLRESTAGPVDWLQAPHHGSRTSSSQAFLERTRPRGVLISRGRHNAFGHPHAQVMARYQALGITVHDSALHGAVRLVL
GSFGQAVGQRSQRRFWREPT

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=856844 Q1Z72_RS11000 WP_235593688.1 2290314..2292536(+) (comA) [Pseudomonas qingdaonensis strain L1712hy]
ATGCGCACAAGGATGTTGGCGCTGGCCTTGGGGCTGTTGGCGCTCAACGTGCTACCTGCCTTGCCGTCGGTCGGCTGGCT
CTGGGGCATCGGCATGACGGGAATGTTATGCCTGGTGTGTCGATGGGCAGTGCCCGGTCTGTTCCTGCTTGGTTTTGCCT
GGGCCTGTTGCTCGGCGCAATGGGCGCTGGACGATCGACTGCGGCCCGAGCTGGAGGGGCGCACCCTGTGGCTGGAAGGT
CGGGTAGTGGGCCTGGCGCAGCAGGGCCCACATTCGGTGCGTTTCGAGCTGGCCGAAGCCTCCTCGCGCCGCGCCCAGTT
GCCGCAGCGGCTGAGCCTGAGCTGGTTTGGCGGGCCGCCGGTCAACAGTGGCGAGCGTTGGCGCCTGGCGGTGCAGCTGC
AGCGCCCCTCCGGCCTGCTCAACCCCCATGGGCCTGACCAGGAAGCGGCCATGCTGGCTCGGCGAATCGGTGCCACCGGC
CGCGTAAGGGCAGGTGAACGACTGGCCCCGGCCAGCCATGCGTGGCGTGATTCGGTGCGCCAGCGCCTGCTCGGGGCTCA
GGCCCATGGGCGCGAAGGTGCGCTGGCGGCGCTGGTGCTGGGTGACGGCGGGGCGCTGGCACAGCAGGACTGGCAGGTGC
TCCAGGCAACCGGCACGGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCCGGTCTGGTGTACGGCCTG
GTGGCCGGGTTGGCACGTGTGGGGGCATGGCCCAGGGCGCTGCCCTGGCTACCCTGGGCGTGCGGCCTGGCGTTTGCGGC
GGCCCTGGCGTACGGCTTGATGGCGGGCTTTCAGGTACCGGTACGACGCGCCTGCATCATGCTGGCGGTGGTGCTGTTGT
GGCGCCTGCGTTTTCGCCATCTGGGGGCCTGGATTCCCTTGCTGCTTGCCCTCAACGGTGTATTGCTGGTGGAGCCATTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTCGCGGCGGTGGCGGTGCTGGTGTATGTGTTCGGCGGCCGGCTGGGGGC
CTGGAACCCCTGGCTGGCGTGGGGCCGGGCCCAATGGCTGATCGCGATCGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGATCAGTCTCTCGGCACCGCTGGCCAATCTGGTTGCGGTGCCCTGGGTCAGTATCGCGGTGTTGCCCCTGGCGCTG
GCCGGCACACTGCTGCAGGGGCTCCCGTTGCTGGGGGAGGCCCTGTTGTGGCTGGCTGGAGGTTCGCTGGCAGCCTTGTT
CTGGACACTGGCACAGGTGGCGCATTGGCAACCGGCCTGGACACCGGTCGCCTTGCCGATATGGGCATGGTTGATGGTGG
GCGGTGGCGCGGTACTGCTGCTGTTGCCGGGCGGGCTGCCGATGCGGGTGCTGGGCTGGCCCCTGCTGCTGCTGGCCGGC
TGTGCGCCTCGCAACGAGATCGCCCATGGGCAACTGGAGGTGTGGCAGCTGGATGTCGGCCAGGGCCAGGCGTTTGTGCT
GCGTACCCGTCACCATGCGATGCTGTATGACGCAGGCCCGGCCACCCGTGGCAGCGACTTGGGTGAGCGGGTGGTCGTGC
CGACTCTGCGCAAGCTGGGGGTGCGCGAGCTGGACCTGGCGCTGATCAGCCATGCCCATGCTGACCATGCCGGCGGCGCC
CTGGCGGTGCAGCGCAGCGTGCCGCTGGTGCGCGTGGTGGGCGGCGACCCGGATGAGCTGCCCGGGCAACTGCAGGCACA
GGCCTGCGCCAGTGGCGAGCAATGGCAGTGGGATGGCGTGCTCTTCAGCCTGTGGCGCTGGCAGCAGGCCGGCGACAGCA
ATCAGCGCTCCTGTGTGTTGCATGTGGATGCCGGCGGCGAAACCCTGCTGCTGACCGGTGACATCGATGCCCAGGCCGAG
CGCGCCTGGCTGCGCGAGTCGACAGCCGGCCCGGTCGACTGGTTGCAGGCGCCCCATCATGGCAGCCGCACCTCGTCGAG
CCAGGCCTTTCTCGAACGAACCCGGCCACGGGGCGTGTTGATTTCGCGAGGGCGCCACAATGCATTCGGGCATCCGCACG
CACAGGTGATGGCGCGTTACCAGGCGCTGGGTATCACCGTGCACGACAGCGCCCTGCACGGGGCGGTGCGCCTGGTGCTG
GGCAGCTTTGGCCAGGCGGTCGGGCAACGCAGCCAGCGCCGCTTCTGGCGGGAGCCGACATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.083

97.162

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.184

100

0.362