Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   V9Z47_RS15730 Genome accession   NZ_CP146670
Coordinates   3109889..3110545 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain MS 21-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3104889..3115545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z47_RS15700 (V9Z47_15700) yecA 3106140..3106805 (-) 666 WP_000847882.1 UPF0149 family protein YecA -
  V9Z47_RS15720 (V9Z47_15720) pgsA 3107455..3108003 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V9Z47_RS15725 (V9Z47_15725) uvrC 3108060..3109892 (-) 1833 WP_001283418.1 excinuclease ABC subunit UvrC Machinery gene
  V9Z47_RS15730 (V9Z47_15730) letA 3109889..3110545 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  V9Z47_RS15735 (V9Z47_15735) yecU 3110841..3111017 (+) 177 WP_001307856.1 protein YecU -
  V9Z47_RS15740 (V9Z47_15740) yecF 3111004..3111228 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  V9Z47_RS15745 (V9Z47_15745) sdiA 3111296..3112018 (-) 723 WP_001154254.1 transcriptional regulator SdiA -
  V9Z47_RS15750 (V9Z47_15750) tcyN 3112248..3113000 (-) 753 WP_001273012.1 L-cystine ABC transporter ATP-binding protein TcyN -
  V9Z47_RS15755 (V9Z47_15755) tcyL 3112997..3113665 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  V9Z47_RS15760 (V9Z47_15760) dcyD 3113680..3114666 (-) 987 WP_001128237.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=856719 V9Z47_RS15730 WP_000611328.1 3109889..3110545(-) (letA) [Escherichia coli strain MS 21-1]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=856719 V9Z47_RS15730 WP_000611328.1 3109889..3110545(-) (letA) [Escherichia coli strain MS 21-1]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482