Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QYQ93_RS17500 Genome accession   NZ_CP129946
Coordinates   3981646..3983871 (-) Length   741 a.a.
NCBI ID   WP_338475150.1    Uniprot ID   -
Organism   Pseudomonas khavaziana strain SR9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3976646..3988871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ93_RS17465 (QYQ93_17465) murB 3977015..3978034 (-) 1020 WP_338475147.1 UDP-N-acetylmuramate dehydrogenase -
  QYQ93_RS17470 (QYQ93_17470) - 3978031..3978495 (-) 465 WP_043046647.1 low molecular weight protein-tyrosine-phosphatase -
  QYQ93_RS17475 (QYQ93_17475) kdsB 3978495..3979259 (-) 765 WP_338475148.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QYQ93_RS17480 (QYQ93_17480) - 3979256..3979441 (-) 186 WP_003174668.1 Trm112 family protein -
  QYQ93_RS17485 (QYQ93_17485) lpxK 3979466..3980476 (-) 1011 WP_338475149.1 tetraacyldisaccharide 4'-kinase -
  QYQ93_RS17490 (QYQ93_17490) - 3980476..3980904 (-) 429 WP_043046643.1 biopolymer transporter ExbD -
  QYQ93_RS17495 (QYQ93_17495) exbB 3980901..3981536 (-) 636 WP_043046641.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QYQ93_RS17500 (QYQ93_17500) comA 3981646..3983871 (-) 2226 WP_338475150.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QYQ93_RS17505 (QYQ93_17505) - 3984007..3984522 (+) 516 WP_043046639.1 DUF2062 domain-containing protein -
  QYQ93_RS17510 (QYQ93_17510) - 3984527..3985885 (-) 1359 WP_338477271.1 sensor histidine kinase -
  QYQ93_RS17515 (QYQ93_17515) - 3985872..3986600 (-) 729 WP_338475151.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80322.22 Da        Isoelectric Point: 10.5804

>NTDB_id=856653 QYQ93_RS17500 WP_338475150.1 3981646..3983871(-) (comA) [Pseudomonas khavaziana strain SR9]
MKTAMLALALGLLALRWLPALPPGAGVLAMLVLALMLLPFRTYPGAFFLFGLSWACISAQWALDDRLRPMLDGQTRWVEG
RVIGLPQQTGTSVRFELADSRSRTARLPKRIRVSWHGGPTVNSGERWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGATA
TVKDGERLTPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARYGCWPRTWPWLPWACGLAFAGALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLMLEPL
ASLQPGFWLSFAAVAALVLAFSGRLGPWSAWQVWTRPQWLIAIGLFPLLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLAGDGLLWLAGGALDGLFKGLALLAAQLPAWIPAEVPLGYWLVSLAGAVILLLPKGLPFRLLGWPMLLLAV
FPPRESIPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGPVDQGARVVLPSLKKFGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPGFLGTQPCNSGERWEWDGVAFELWQWAGASDGNPRSCVLQVEANGERLLLTGDIDRAAE
RAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPASVLISRGRSNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLRL
GTFLPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=856653 QYQ93_RS17500 WP_338475150.1 3981646..3983871(-) (comA) [Pseudomonas khavaziana strain SR9]
ATGAAAACAGCGATGTTGGCCTTGGCGCTGGGGCTACTGGCGTTGCGTTGGTTACCTGCGTTGCCGCCTGGCGCAGGGGT
GTTGGCCATGTTGGTGCTGGCGTTGATGCTGCTGCCTTTTCGCACCTATCCCGGGGCGTTCTTTCTGTTTGGTTTGAGTT
GGGCCTGTATCAGTGCGCAGTGGGCGCTGGATGACCGCTTGCGCCCGATGCTGGATGGGCAGACGCGCTGGGTCGAAGGG
CGTGTCATCGGCCTGCCGCAGCAGACGGGCACAAGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGGCT
GCCCAAGCGCATTCGCGTGTCCTGGCACGGCGGGCCCACGGTTAACAGCGGGGAGCGCTGGCGCCTGGCATTGACGCTGA
AGCGGCCTGCCGGCCTGCTTAATTTCCACGGGTTTGACCATGAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCCACCGCG
ACGGTAAAGGACGGCGAGCGCCTGACGCCGGCCCGCAATGCCTGGCGCGACGCTGTCCGCCAGCGCCTGATGGCCGTGGA
TGCCCAGGGCCGCGAGGCGGGCTTGGCTGCATTGGTACTGGGCGACGGTTCCGGGCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCATATTGGCCTGCTGGCGGGGTTGATCTACGGCTTG
ATCGCTTTGTTGGCGCGCTATGGGTGCTGGCCCCGAACCTGGCCGTGGCTGCCATGGGCGTGCGGCCTGGCATTTGCCGG
GGCGTTGGCTTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCTTGCGTCATGGTGGGGCTGGTGTTGCTGT
GGCGTTTGCGCTTTCGTCACTTGGGTGTGTGGTGGCCGTTGTTGCTGGCGCTGAACGCTGTGCTGATGCTTGAGCCCCTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCAGCGCTGGTCCTGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGCGCCTGGCAGGTCTGGACGCGTCCCCAGTGGTTGATCGCCATTGGCTTGTTCCCGCTGTTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGTGCACCCGTGGCCAACCTGGTTGCCGTGCCATGGATCAGCCTGGTGGTTCTTCCCTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGCCGGCGACGGTTTGCTGTGGTTGGCCGGTGGTGCGCTGGACGGCTTATT
CAAGGGCCTGGCGCTGTTGGCCGCGCAACTGCCGGCCTGGATCCCGGCCGAGGTGCCTCTGGGCTACTGGCTGGTGAGCC
TGGCCGGCGCAGTGATTTTGCTACTGCCCAAGGGCCTCCCGTTTCGGTTATTGGGCTGGCCCATGCTGTTGTTGGCGGTG
TTTCCACCCAGGGAGTCGATACCCCATGGGCAGGTGGACGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCGCTGATCCT
GCGCACCCGCCATCATTCCTTGCTCTATGACGCCGGGCCCCGGTCGGGGCCTGTCGACCAGGGGGCGCGGGTCGTATTGC
CGTCGTTGAAAAAGTTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCTGATGCCGATCATGCCGGCGGTGCG
GCGGCAGTGGCCCGGGGGCTGCCCGTCAAGCGCGTGGTGGGCGGTGAAACCGAAGGGCTGCCGGGGTTTCTCGGTACCCA
GCCTTGTAACAGTGGCGAGCGGTGGGAATGGGATGGCGTGGCCTTTGAACTGTGGCAATGGGCCGGTGCAAGTGATGGCA
ATCCGAGATCCTGCGTACTGCAGGTCGAGGCGAATGGCGAACGCCTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAA
CGGGCATTCCTGGCCTCGCCGCTGGCGGTGCCCACCGATTGGTTGCAGGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCCTTCCTGCAGCGGCTGGCGCCGGCATCGGTGCTGATCTCCCGTGGGCGCAGCAATGCATTCGGCCATCCTCATC
CACAAGTAATGGAGCGCTATCAGGCCTTGGGCAGTCGGGTATATGACAGCGCTGAACAAGGCGCTGTGCGCCTGCGCCTG
GGAACGTTCCTTCCACCGACTGTTGCGCGCAGTCAACGCAGGTTCTGGCGAGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.524

96.356

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.723

100

0.383