Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QYQ93_RS17495 Genome accession   NZ_CP129946
Coordinates   3980901..3981536 (-) Length   211 a.a.
NCBI ID   WP_043046641.1    Uniprot ID   A0A0D0SQV5
Organism   Pseudomonas khavaziana strain SR9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3975901..3986536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ93_RS17460 (QYQ93_17460) - 3976270..3976941 (+) 672 WP_046068609.1 Bax inhibitor-1/YccA family protein -
  QYQ93_RS17465 (QYQ93_17465) murB 3977015..3978034 (-) 1020 WP_338475147.1 UDP-N-acetylmuramate dehydrogenase -
  QYQ93_RS17470 (QYQ93_17470) - 3978031..3978495 (-) 465 WP_043046647.1 low molecular weight protein-tyrosine-phosphatase -
  QYQ93_RS17475 (QYQ93_17475) kdsB 3978495..3979259 (-) 765 WP_338475148.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QYQ93_RS17480 (QYQ93_17480) - 3979256..3979441 (-) 186 WP_003174668.1 Trm112 family protein -
  QYQ93_RS17485 (QYQ93_17485) lpxK 3979466..3980476 (-) 1011 WP_338475149.1 tetraacyldisaccharide 4'-kinase -
  QYQ93_RS17490 (QYQ93_17490) - 3980476..3980904 (-) 429 WP_043046643.1 biopolymer transporter ExbD -
  QYQ93_RS17495 (QYQ93_17495) exbB 3980901..3981536 (-) 636 WP_043046641.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QYQ93_RS17500 (QYQ93_17500) comA 3981646..3983871 (-) 2226 WP_338475150.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QYQ93_RS17505 (QYQ93_17505) - 3984007..3984522 (+) 516 WP_043046639.1 DUF2062 domain-containing protein -
  QYQ93_RS17510 (QYQ93_17510) - 3984527..3985885 (-) 1359 WP_338477271.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22864.07 Da        Isoelectric Point: 7.3615

>NTDB_id=856652 QYQ93_RS17495 WP_043046641.1 3980901..3981536(-) (exbB) [Pseudomonas khavaziana strain SR9]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMATNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=856652 QYQ93_RS17495 WP_043046641.1 3980901..3981536(-) (exbB) [Pseudomonas khavaziana strain SR9]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCATTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGCAAAAACTCAAGGAACTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCTGCGCGGGTGATTCATGAGCTGGAGCGTTACAT
CAACGCTCTCGGCACCATCGCCGCCATGGCACCGCTGCTCGGCCTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCGCGGGCATGGCGACCAACGCAGCGGTACTCGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATTCCCGCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0SQV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872