Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QZL45_RS12300 Genome accession   NZ_CP129944
Coordinates   2626085..2626735 (+) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain I7A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2621085..2631735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS12285 - 2621686..2623134 (-) 1449 WP_222764240.1 MSHA biogenesis protein MshI -
  QZL45_RS12290 csrD 2623142..2625136 (-) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  QZL45_RS12295 ssb 2625272..2625802 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  QZL45_RS12300 qstR 2626085..2626735 (+) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  QZL45_RS12305 galU 2626863..2627732 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QZL45_RS12310 uvrA 2627870..2630692 (+) 2823 WP_308413353.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=856626 QZL45_RS12300 WP_024374534.1 2626085..2626735(+) (qstR) [Vibrio fluvialis strain I7A]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=856626 QZL45_RS12300 WP_024374534.1 2626085..2626735(+) (qstR) [Vibrio fluvialis strain I7A]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTTGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGGAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTACCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528