Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QZL45_RS08835 Genome accession   NZ_CP129944
Coordinates   1880890..1883127 (-) Length   745 a.a.
NCBI ID   WP_222763236.1    Uniprot ID   -
Organism   Vibrio fluvialis strain I7A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1875890..1888127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS08815 kdsB 1877195..1877938 (-) 744 WP_020327783.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QZL45_RS08820 - 1877938..1878117 (-) 180 WP_020327784.1 Trm112 family protein -
  QZL45_RS08825 lpxK 1878098..1879105 (-) 1008 WP_020430040.1 tetraacyldisaccharide 4'-kinase -
  QZL45_RS08830 msbA 1879109..1880857 (-) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QZL45_RS08835 comEC 1880890..1883127 (-) 2238 WP_222763236.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QZL45_RS08840 - 1883136..1883666 (+) 531 WP_020327788.1 DUF2062 domain-containing protein -
  QZL45_RS08845 lolE 1883799..1885043 (-) 1245 WP_104965885.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  QZL45_RS08850 lolD 1885044..1885730 (-) 687 WP_044365533.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  QZL45_RS08855 lolC 1885723..1886931 (-) 1209 WP_055453396.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  QZL45_RS08860 - 1887107..1887677 (+) 571 Protein_1716 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83397.71 Da        Isoelectric Point: 8.5298

>NTDB_id=856611 QZL45_RS08835 WP_222763236.1 1880890..1883127(-) (comEC) [Vibrio fluvialis strain I7A]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLAVSRFRVFGGIAFALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQELHTFWQPKVRLIAPVDLQIGDQFEFSVTVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNLRSMLHRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGSAMMRLHISLLWMPFVSGMCIAAIYAWLAGFTLPTQRALLMCALNVALTMSGMRVTAVQRILITLAAVL
IVTPFAPLSSSFWLSFLAVALVLYQLADRTTRHGWRKWLTMQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTVFVGDITWLWSGIDLSFWPLRRALEWAGSSWIAVSQTAPVVFSVGLLLWICRPILSWRVQLYAGIALLGL
GIFTPQDERWRVDILDVGHGLSVLIERNHNALLYDTGSSWSEGSYVRSLIVPILNQRGIDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSAPNWQACHAGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYLDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=856611 QZL45_RS08835 WP_222763236.1 1880890..1883127(-) (comEC) [Vibrio fluvialis strain I7A]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCACTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGCGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGTTTGCCTTGTTAGTGATAGTAACACATGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAAGAATTGCACACTTTTTGGCAGCCGAAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTGACGGTGAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCACAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTGCGCAGTAT
GCTGCACCGTCAAATCAAAACATGGACGCAAAATAGCCCGTCACAAGGCATGATCTTGGCGCTGACATTTGGTGACCGTA
ACGGCATCCATGAAGCTGAATGGCGCTCACTGAGAAACAGCGGACTCATTCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAAGTGCGATGATGCGGCTGCATATCAGTTTGCTGTGGATGCCTTTCGT
TTCCGGGATGTGTATTGCCGCGATTTATGCCTGGCTGGCAGGATTTACCTTACCGACCCAGCGTGCTTTGTTGATGTGCG
CTCTCAACGTCGCTCTCACGATGAGTGGTATGCGTGTGACGGCGGTGCAACGAATCCTTATCACCCTTGCTGCGGTATTA
ATCGTGACGCCATTTGCGCCGCTCTCCAGCAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACGCGTCATGGCTGGCGAAAATGGCTGACGATGCAATGCTCGTTAGTGACCATGATGATTCCGGTTTCCG
CATATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCGCTCTACAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATTGTG
CCGCTGCTGTTTCTCGCACTGTTTCTCACTGTCTTTGTCGGAGATATCACCTGGCTGTGGAGTGGGATTGACCTGAGCTT
CTGGCCACTGCGGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCGCCGGTCGTATTTAGCG
TTGGCCTTCTCCTTTGGATTTGCCGCCCGATATTAAGCTGGCGAGTTCAACTCTATGCGGGAATTGCGTTACTTGGCTTG
GGCATTTTTACCCCACAGGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGTCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACTGGCAGTAGCTGGTCTGAAGGCAGTTACGTTCGCTCTTTGATCGTTCCAATAC
TCAATCAGCGCGGTATCGACTCTCTGGATGGTTTAATTCTCAGTCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGCTCCAAATTGGCAGGCTTGCCACGCGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACGGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCGCATCACGGCAGTAAAACGTCCTCAACGCGTCAATT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCATCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATCTGGATGCGGGATCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACCTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(33-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)

Competence protein (Competence)

(208-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

54.111

100

0.548
  comEC Vibrio parahaemolyticus RIMD 2210633

42.098

100

0.426
  comEC Vibrio campbellii strain DS40M4

41.005

100

0.416