Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   V9Z40_RS02025 Genome accession   NZ_CP146667
Coordinates   436737..437369 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain MS 16-3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 431737..442369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z40_RS02000 (V9Z40_02000) yhfG 431870..432037 (+) 168 WP_000736858.1 YhfG family protein -
  V9Z40_RS02005 (V9Z40_02005) fic 432027..432629 (+) 603 WP_001280654.1 putative adenosine monophosphate-protein transferase Fic -
  V9Z40_RS02010 (V9Z40_02010) pabA 432661..433224 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  V9Z40_RS02015 (V9Z40_02015) argD 433310..434533 (+) 1224 WP_000963802.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  V9Z40_RS02020 (V9Z40_02020) yhfK 434596..436686 (-) 2091 WP_001304921.1 YccS/YhfK family putative transporter -
  V9Z40_RS02025 (V9Z40_02025) crp 436737..437369 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  V9Z40_RS02030 (V9Z40_02030) yhfA 437671..438075 (+) 405 WP_001148908.1 OsmC family protein -
  V9Z40_RS02035 (V9Z40_02035) prkB 438130..438999 (-) 870 WP_001274684.1 phosphoribulokinase -
  V9Z40_RS02040 (V9Z40_02040) yheU 439053..439271 (-) 219 WP_000907085.1 YheU family protein -
  V9Z40_RS02045 (V9Z40_02045) yheT 439265..440287 (-) 1023 WP_000057388.1 hydrolase -
  V9Z40_RS02050 (V9Z40_02050) yheS 440287..442200 (-) 1914 WP_001608570.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=856600 V9Z40_RS02025 WP_000242755.1 436737..437369(-) (crp) [Escherichia coli strain MS 16-3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=856600 V9Z40_RS02025 WP_000242755.1 436737..437369(-) (crp) [Escherichia coli strain MS 16-3]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467