Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V9Z40_RS01410 Genome accession   NZ_CP146667
Coordinates   302686..303450 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain MS 16-3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 297686..308450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z40_RS01380 (V9Z40_01380) - 298320..299678 (-) 1359 WP_001304938.1 PTS galactitol transporter subunit IIC -
  V9Z40_RS01385 (V9Z40_01385) - 299755..300036 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  V9Z40_RS01390 (V9Z40_01390) - 300033..300506 (-) 474 WP_001161647.1 PTS sugar transporter subunit IIA -
  V9Z40_RS01395 (V9Z40_01395) - 300531..301277 (-) 747 WP_001296489.1 UTRA domain-containing protein -
  V9Z40_RS01400 (V9Z40_01400) nikR 301476..301877 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  V9Z40_RS01405 (V9Z40_01405) nikE 301883..302689 (-) 807 WP_000173677.1 nickel import ATP-binding protein NikE -
  V9Z40_RS01410 (V9Z40_01410) amiE 302686..303450 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  V9Z40_RS01415 (V9Z40_01415) nikC 303450..304283 (-) 834 WP_001008954.1 nickel ABC transporter permease subunit NikC -
  V9Z40_RS01420 (V9Z40_01420) nikB 304280..305224 (-) 945 WP_000947078.1 nickel ABC transporter permease subunit NikB -
  V9Z40_RS01425 (V9Z40_01425) nikA 305224..306798 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  V9Z40_RS01430 (V9Z40_01430) acpT 306909..307496 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=856596 V9Z40_RS01410 WP_001136232.1 302686..303450(-) (amiE) [Escherichia coli strain MS 16-3]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=856596 V9Z40_RS01410 WP_001136232.1 302686..303450(-) (amiE) [Escherichia coli strain MS 16-3]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTGCACACCATGCACACTCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGACGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398