Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QZL45_RS00680 Genome accession   NZ_CP129944
Coordinates   148578..149582 (+) Length   334 a.a.
NCBI ID   WP_308413239.1    Uniprot ID   -
Organism   Vibrio fluvialis strain I7A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143578..154582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS00660 - 143728..143991 (-) 264 WP_020429299.1 DUF3624 domain-containing protein -
  QZL45_RS00665 - 144120..144854 (-) 735 WP_020329437.1 glutathione peroxidase -
  QZL45_RS00670 oxyR 144998..145894 (+) 897 WP_020329438.1 DNA-binding transcriptional regulator OxyR -
  QZL45_RS00675 - 145955..148435 (-) 2481 WP_308413240.1 PBP1A family penicillin-binding protein -
  QZL45_RS00680 pilM 148578..149582 (+) 1005 WP_308413239.1 type IV pilus assembly protein PilM Machinery gene
  QZL45_RS00685 pilN 149572..150162 (+) 591 WP_024374094.1 PilN domain-containing protein Machinery gene
  QZL45_RS00690 pilO 150155..150745 (+) 591 WP_020429291.1 type 4a pilus biogenesis protein PilO Machinery gene
  QZL45_RS00695 pilP 150735..151247 (+) 513 WP_308413238.1 pilus assembly protein PilP Machinery gene
  QZL45_RS00700 pilQ 151272..153008 (+) 1737 WP_024374092.1 type IV pilus secretin PilQ Machinery gene
  QZL45_RS00705 aroK 153196..153714 (+) 519 WP_004728569.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36817.12 Da        Isoelectric Point: 6.6961

>NTDB_id=856595 QZL45_RS00680 WP_308413239.1 148578..149582(+) (pilM) [Vibrio fluvialis strain I7A]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSEDIFADNHTLNYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSELDASEQEFAVYQAFSHQSPLPIEELSLDFVVTGEKTLGRSSSLTYQVYATRREVIDNRLSAVSKAGFEP
LLFDMQIHGLLNIWQWVSRAQQRTDWMLVDVGFSQTSLCIDFADKTPFYKDIPLGTRQLVAATSGGNADLTSPQAHFIQE
LVERLARQIQLFLSLQGHQPLAGIWLSGGGAATEGLAQAISERLALPCELFNPLAEFTCRASLRRQPQADLQRFSTAAGL
ALRGLNWLENGHAA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=856595 QZL45_RS00680 WP_308413239.1 148578..149582(+) (pilM) [Vibrio fluvialis strain I7A]
ATGGGTAAATCATTAGTTACAGGTGTCGATATTGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAAGGCGAATC
GTATTCGCTGGTCGGTTACCAAGAGATAGTCGTATCCGAGGATATTTTCGCTGATAACCACACGCTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTACCGCTATTTAGTCGTAAAGTGGCGCTGGCTGTACCGGACAACGCA
GTAATAAGTAAGGTATTACAGATAGATAGCGAACTGGATGCCAGCGAACAAGAGTTCGCGGTCTATCAGGCTTTTTCTCA
TCAATCGCCGCTACCCATCGAAGAGTTGAGCCTGGATTTCGTTGTCACCGGAGAAAAAACACTGGGGCGCAGCAGTTCGT
TGACGTATCAGGTCTATGCAACCCGACGTGAAGTGATCGACAACCGTTTGTCTGCGGTGAGCAAAGCGGGTTTTGAGCCG
CTGCTGTTTGATATGCAGATTCACGGTCTGCTCAATATCTGGCAATGGGTCAGCCGTGCTCAGCAACGCACCGATTGGAT
GCTGGTTGATGTCGGGTTCAGTCAAACCTCATTGTGCATCGACTTTGCCGATAAAACGCCGTTTTACAAAGACATTCCGT
TGGGAACCCGCCAACTGGTTGCGGCGACCTCCGGTGGTAACGCTGACCTTACCAGCCCGCAAGCACACTTCATTCAGGAG
TTGGTTGAGCGTCTGGCGCGCCAGATCCAGCTGTTTCTTTCTCTGCAAGGCCATCAACCGCTGGCCGGTATCTGGCTATC
CGGTGGCGGCGCGGCAACGGAAGGTTTGGCGCAGGCGATTAGCGAACGTCTGGCTCTGCCTTGCGAGCTGTTTAACCCTC
TGGCGGAGTTTACTTGCCGCGCATCGCTACGCCGCCAGCCTCAGGCTGATTTGCAGCGTTTCAGTACTGCGGCCGGCTTG
GCGCTGCGCGGCCTGAATTGGCTGGAGAACGGCCATGCTGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(237-324)

Type IV pilus assembly protein PilM; (PilM_2)

(8-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

65.68

100

0.665
  pilM Vibrio campbellii strain DS40M4

48.406

100

0.5