Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KJS40_RS11210 Genome accession   NZ_AP024515
Coordinates   2480319..2480612 (-) Length   97 a.a.
NCBI ID   WP_213537807.1    Uniprot ID   -
Organism   Nitrosospira sp. NRS527     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2480862..2481649 2480319..2480612 flank 250


Gene organization within MGE regions


Location: 2480319..2481649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS40_RS11210 (NNRS527_02375) comE 2480319..2480612 (-) 294 WP_213537807.1 helix-hairpin-helix domain-containing protein Machinery gene
  KJS40_RS11215 - 2480886..2481649 (+) 764 WP_244859763.1 IS5 family transposase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10333.16 Da        Isoelectric Point: 10.8127

>NTDB_id=85650 KJS40_RS11210 WP_213537807.1 2480319..2480612(-) (comE) [Nitrosospira sp. NRS527]
MKKLLFVIIALFTFTGAAYAAVNINTATQAELETLQGIGPAKAKAIIDHRKKNGSFKSADDLEKVNGIGPATLKRLRKDI
AVGGATTVKKENKPVPK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=85650 KJS40_RS11210 WP_213537807.1 2480319..2480612(-) (comE) [Nitrosospira sp. NRS527]
ATGAAAAAACTGTTATTTGTTATTATCGCGCTGTTTACATTTACCGGCGCTGCCTACGCGGCCGTTAACATCAATACCGC
AACCCAGGCCGAGCTTGAAACGCTTCAGGGAATTGGTCCGGCCAAAGCCAAGGCTATCATCGATCATCGCAAGAAGAATG
GATCTTTCAAGTCGGCTGATGACCTCGAAAAGGTCAACGGTATCGGCCCTGCTACGCTGAAGCGGTTGCGCAAGGACATA
GCTGTGGGTGGGGCTACTACGGTTAAGAAAGAAAATAAACCTGTCCCCAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56.842

97.938

0.557
  comE Neisseria gonorrhoeae MS11

56.842

97.938

0.557
  comE Neisseria gonorrhoeae MS11

56.842

97.938

0.557
  comE Neisseria gonorrhoeae MS11

56.842

97.938

0.557
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.439

84.536

0.443

Multiple sequence alignment