Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QZL36_RS13760 Genome accession   NZ_CP129932
Coordinates   2972392..2973036 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2967392..2978036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS13745 - 2967876..2969321 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  QZL36_RS13750 csrD 2969333..2971342 (-) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  QZL36_RS13755 ssb 2971583..2972113 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  QZL36_RS13760 qstR 2972392..2973036 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  QZL36_RS13765 galU 2973294..2974166 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QZL36_RS13770 uvrA 2974304..2977126 (+) 2823 WP_025508045.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=856450 QZL36_RS13760 WP_005480993.1 2972392..2973036(+) (qstR) [Vibrio parahaemolyticus isolate BM18B]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=856450 QZL36_RS13760 WP_005480993.1 2972392..2973036(+) (qstR) [Vibrio parahaemolyticus isolate BM18B]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGCCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523