Detailed information NTG0856441

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QZL36_RS12710
• Genome accession: NZ_CP129932
• Coordinates: 2773294..2774163 (+)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus isolate BM18B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2768294..2779163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL36_RS12690	nadC	2768696..2769583 (+)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QZL36_RS12695	-	2769847..2770290 (+)	444	WP_149151214.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QZL36_RS12700	pilB	2770297..2771982 (+)	1686	WP_308385410.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QZL36_RS12705	pilC	2772006..2773229 (+)	1224	WP_308385409.1	type II secretion system F family protein	Machinery gene
QZL36_RS12710	pilD	2773294..2774163 (+)	870	WP_025533026.1	A24 family peptidase	Machinery gene
QZL36_RS12715	coaE	2774164..2774778 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
QZL36_RS12720	zapD	2774806..2775546 (+)	741	WP_005480890.1	cell division protein ZapD	-
QZL36_RS12725	yacG	2775615..2775809 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
QZL36_RS12730	rplS	2776104..2776457 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
QZL36_RS12735	trmD	2776499..2777242 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QZL36_RS12740	rimM	2777270..2777818 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
QZL36_RS12745	rpsP	2777847..2778095 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=856441 QZL36_RS12710 WP_025533026.1 2773294..2774163(+) (pilD) [Vibrio parahaemolyticus isolate BM18B]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=856441 QZL36_RS12710 WP_025533026.1 2773294..2774163(+) (pilD) [Vibrio parahaemolyticus isolate BM18B]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTAGCTTATCATTTTGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45