Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QZL34_RS14775 Genome accession   NZ_CP129930
Coordinates   3151663..3152295 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3146663..3157295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS14750 - 3146683..3148602 (+) 1920 WP_025638268.1 ABC transporter ATP-binding protein -
  QZL34_RS14755 - 3148599..3149087 (+) 489 WP_005458139.1 TIGR02444 family protein -
  QZL34_RS14760 - 3149174..3150181 (+) 1008 WP_005496534.1 hydrolase -
  QZL34_RS14765 - 3150215..3150427 (+) 213 WP_005458136.1 YheU family protein -
  QZL34_RS14770 - 3150553..3151422 (+) 870 WP_005458134.1 phosphoribulokinase -
  QZL34_RS14775 crp 3151663..3152295 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  QZL34_RS14780 - 3152452..3153243 (-) 792 WP_315868330.1 DUF1338 domain-containing protein -
  QZL34_RS14785 astD 3153486..3154943 (-) 1458 WP_315868331.1 succinylglutamate-semialdehyde dehydrogenase -
  QZL34_RS14790 astA 3154972..3155991 (-) 1020 WP_005458129.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=856410 QZL34_RS14775 WP_005381432.1 3151663..3152295(+) (crp) [Vibrio parahaemolyticus isolate BM24A]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=856410 QZL34_RS14775 WP_005381432.1 3151663..3152295(+) (crp) [Vibrio parahaemolyticus isolate BM24A]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCAGGTGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGCTCTGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCTAAACAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCGCACGGTAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471