Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q0F97_RS00040 Genome accession   NZ_CP129878
Coordinates   9180..9683 (+) Length   167 a.a.
NCBI ID   WP_041591730.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain H2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4180..14683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F97_RS00030 (Q0F97_00030) gyrA 6129..8594 (+) 2466 WP_290127763.1 DNA gyrase subunit A -
  Q0F97_RS00035 (Q0F97_00035) rpsF 8839..9138 (+) 300 WP_014123404.1 30S ribosomal protein S6 -
  Q0F97_RS00040 (Q0F97_00040) ssb 9180..9683 (+) 504 WP_041591730.1 single-stranded DNA-binding protein Machinery gene
  Q0F97_RS00045 (Q0F97_00045) rpsR 9707..9946 (+) 240 WP_014123406.1 30S ribosomal protein S18 -
  Q0F97_RS00050 (Q0F97_00050) - 10141..11595 (+) 1455 WP_014123407.1 DHH family phosphoesterase -
  Q0F97_RS00055 (Q0F97_00055) rplI 11603..12055 (+) 453 WP_061840904.1 50S ribosomal protein L9 -
  Q0F97_RS00060 (Q0F97_00060) dnaB 12149..13516 (+) 1368 WP_061840903.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18493.16 Da        Isoelectric Point: 4.5093

>NTDB_id=856071 Q0F97_RS00040 WP_041591730.1 9180..9683(+) (ssb) [Tetragenococcus halophilus strain H2]
MINNVVLVGRLTKDPDLRYTSNGVAVATFTLAVNRTFTNQNGEREADFINCVIWRKAAENLANLGRKGALIGATGRIQTR
NYENQQGQRVFVTEVVAENFQLLEPRSVSEQRRSADNDSVGGNQSNFGNSYNQTQTSQTPETPNFDRDNNDPFGGSSIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=856071 Q0F97_RS00040 WP_041591730.1 9180..9683(+) (ssb) [Tetragenococcus halophilus strain H2]
TTGATTAACAACGTTGTACTAGTAGGAAGATTGACAAAAGACCCTGATTTACGTTACACCTCTAATGGCGTAGCAGTTGC
TACTTTTACTTTAGCCGTGAATCGTACATTTACGAATCAAAATGGTGAAAGGGAAGCGGATTTTATTAACTGTGTCATTT
GGAGAAAGGCTGCGGAAAATCTCGCAAATTTAGGACGTAAAGGCGCGTTAATTGGCGCCACTGGAAGAATTCAGACAAGA
AATTACGAAAATCAACAAGGACAACGTGTTTTTGTAACTGAAGTTGTGGCAGAAAATTTCCAATTATTGGAACCTCGTTC
TGTCAGTGAGCAACGTCGTTCTGCTGATAATGACTCTGTTGGTGGCAATCAATCGAACTTTGGGAACAGTTATAATCAAA
CACAAACATCTCAAACTCCTGAAACACCTAATTTTGATCGTGATAACAACGATCCTTTTGGCGGATCATCAATTGATATT
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.629
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.989

100

0.629
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389