Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   QZN14_RS04920 Genome accession   NZ_CP129875
Coordinates   954821..956134 (-) Length   437 a.a.
NCBI ID   WP_000042576.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 949821..961134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN14_RS04900 - 951273..952046 (-) 774 WP_000622399.1 DUF3307 domain-containing protein -
  QZN14_RS04905 - 952036..952722 (-) 687 WP_000280311.1 SatD family protein -
  QZN14_RS04910 ffh 952817..954382 (-) 1566 WP_000863591.1 signal recognition particle protein -
  QZN14_RS04915 - 954400..954732 (-) 333 WP_000402075.1 putative DNA-binding protein -
  QZN14_RS04920 ciaH 954821..956134 (-) 1314 WP_000042576.1 HAMP domain-containing sensor histidine kinase Regulator
  QZN14_RS04925 ciaR 956118..956798 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  QZN14_RS04930 - 956960..959509 (-) 2550 WP_000859382.1 M1 family metallopeptidase -
  QZN14_RS04935 phoU 959655..960308 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  QZN14_RS04940 pstB 960342..961100 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence


Protein


Download         Length: 437 a.a.        Molecular weight: 49678.12 Da        Isoelectric Point: 9.4961

>NTDB_id=855999 QZN14_RS04920 WP_000042576.1 954821..956134(-) (ciaH) [Streptococcus agalactiae COH1]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYHAVTVKVNNPAYPNVT
YMTAIVNIDQLVNAKERYEKIIIFVMTTFWIISIGASIYLAKWAQKPIIENYERQKAFVENASHELRTPLAVLQNRLETL
FRKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLIAQENGKNFTGHNMIQD
SFKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGL
GLSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPKVKG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=855999 QZN14_RS04920 WP_000042576.1 954821..956134(-) (ciaH) [Streptococcus agalactiae COH1]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGAAGTCAT
TAACTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTT
TAACCAACATCTTTGGTCAAGATGAGACATATCATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACT
TACATGACAGCTATTGTTAATATTGATCAATTAGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGAC
TACTTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGGCACAAAAACCGATTATAGAAAACTACGAAA
GACAGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTA
TTCAGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTAT
TTTAACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTT
TTGATAGTATCTTTGAGAATTATGATCTAATCGCCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATCCAAGAT
AGTTTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGA
TGGTAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAG
AGGAGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGGTTTGGCCTC
GGCCTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTAT
TTTTAAGATAAAACTACCAAAAGTAAAAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

60.373

98.169

0.593

  ciaH Streptococcus pneumoniae Rx1

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae D39

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae R6

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae TIGR4

52.143

96.11

0.501