Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KJS44_RS13875 Genome accession   NZ_AP024510
Coordinates   2967014..2967481 (-) Length   155 a.a.
NCBI ID   WP_008690405.1    Uniprot ID   -
Organism   Longicatena caecimuris strain 3BBH23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2962014..2972481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS44_RS13855 (L3BBH23_27440) rplI 2963362..2963808 (-) 447 WP_008690412.1 50S ribosomal protein L9 -
  KJS44_RS13860 (L3BBH23_27450) - 2963786..2965777 (-) 1992 WP_008690410.1 DHH family phosphoesterase -
  KJS44_RS13865 (L3BBH23_27460) - 2965755..2966690 (-) 936 WP_008690408.1 DUF2232 domain-containing protein -
  KJS44_RS13870 (L3BBH23_27470) rpsR 2966762..2966992 (-) 231 WP_008690406.1 30S ribosomal protein S18 -
  KJS44_RS13875 (L3BBH23_27480) ssbA 2967014..2967481 (-) 468 WP_008690405.1 single-stranded DNA-binding protein Machinery gene
  KJS44_RS13880 (L3BBH23_27490) rpsF 2967504..2967797 (-) 294 WP_008690404.1 30S ribosomal protein S6 -
  KJS44_RS13885 (L3BBH23_27500) - 2968171..2970879 (+) 2709 WP_008690403.1 sensor domain-containing phosphodiesterase -
  KJS44_RS13890 (L3BBH23_27510) - 2971074..2972429 (+) 1356 WP_008690402.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16760.45 Da        Isoelectric Point: 4.6847

>NTDB_id=85551 KJS44_RS13875 WP_008690405.1 2967014..2967481(-) (ssbA) [Longicatena caecimuris strain 3BBH23]
MINRVVLVGRMTKDPVLRKTGTGASVTSFTVACDRRIKTEGQPTADFINCVCWNKVADNTAQFTHKGSLVGVEGRIQTRS
YDDQSGRRVYVTEVVADSVQFLEPKGTNSAAAVNAYTPDYDAGNQGYQSDNASPSYSSDFASSDTLDIASDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=85551 KJS44_RS13875 WP_008690405.1 2967014..2967481(-) (ssbA) [Longicatena caecimuris strain 3BBH23]
ATGATCAACCGTGTAGTATTAGTAGGACGCATGACAAAGGATCCGGTTTTACGTAAGACTGGAACAGGAGCCAGCGTAAC
ATCCTTTACTGTAGCATGTGATCGCAGAATTAAGACCGAAGGACAGCCGACAGCGGATTTTATCAACTGTGTGTGCTGGA
ATAAAGTTGCTGATAATACGGCACAATTCACGCATAAAGGAAGCTTAGTTGGAGTGGAAGGAAGAATTCAGACACGCAGC
TATGACGACCAGAGTGGAAGACGTGTCTATGTGACCGAAGTTGTCGCAGACTCTGTTCAATTTTTGGAGCCTAAGGGAAC
CAACAGTGCTGCAGCCGTTAATGCTTACACACCTGATTATGATGCAGGAAATCAAGGCTATCAGAGCGATAATGCATCAC
CGTCCTACTCCAGTGACTTTGCATCCAGCGATACATTGGATATCGCCAGTGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.535
  ssb Latilactobacillus sakei subsp. sakei 23K

45.294

100

0.497
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.357

72.258

0.4

Multiple sequence alignment