Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V8690_RS09810 Genome accession   NZ_CP146350
Coordinates   2086587..2088731 (-) Length   714 a.a.
NCBI ID   WP_338777386.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2081587..2093731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS09785 (V8690_09785) - 2081845..2082030 (+) 186 WP_338777380.1 hypothetical protein -
  V8690_RS09790 (V8690_09790) - 2082079..2082384 (-) 306 WP_338785303.1 hypothetical protein -
  V8690_RS09795 (V8690_09795) - 2082554..2083555 (-) 1002 WP_338777381.1 TerC family protein -
  V8690_RS09800 (V8690_09800) - 2083778..2085793 (-) 2016 WP_338777382.1 TerD family protein -
  V8690_RS09805 (V8690_09805) - 2085870..2086448 (-) 579 WP_338777384.1 TerD family protein -
  V8690_RS09810 (V8690_09810) uvrB 2086587..2088731 (-) 2145 WP_338777386.1 excinuclease ABC subunit UvrB Machinery gene
  V8690_RS09815 (V8690_09815) - 2088772..2089638 (-) 867 WP_338777388.1 MHYT domain-containing protein -
  V8690_RS09820 (V8690_09820) - 2089925..2090797 (+) 873 WP_338777390.1 glycerophosphodiester phosphodiesterase family protein -
  V8690_RS09825 (V8690_09825) - 2090871..2091425 (+) 555 WP_338777392.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  V8690_RS09830 (V8690_09830) - 2091437..2091865 (-) 429 WP_338777394.1 VOC family protein -
  V8690_RS09835 (V8690_09835) - 2091965..2092873 (+) 909 WP_338777395.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80333.05 Da        Isoelectric Point: 4.8901

>NTDB_id=855128 V8690_RS09810 WP_338777386.1 2086587..2088731(-) (uvrB) [Streptomyces sp. DG1A-41]
MRPVSHIERTVAPFEVVSPYQPSGDQPTAIAELAQRIQAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGAYELSRSDGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMF
ADKITPAMAKAIDETNRRREKQVAYNKERGIDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRKAKKDGGGTKSPVPSLG
RTAEGAKPAKGRGKAKETVPTDRPAAELSEQIEELTARMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=855128 V8690_RS09810 WP_338777386.1 2086587..2088731(-) (uvrB) [Streptomyces sp. DG1A-41]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAGCGGCGACCAGCC
GACGGCCATCGCCGAGCTCGCCCAACGCATCCAGGCGGGCGAGAAGGACGTCGTCCTCCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACGCTCGTGATGGCGCCGAACAAGACGCTTGCCGCC
CAGCTGGCGAACGAGTTCCGGGAGCTGCTCCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTTCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTGGGTACGCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCCGTGTCGGCGAGGAACACGACCGCGACGAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCTTTCACCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACGCTGCACCCGGTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCCTCCCACTACGTCGCAGGGCCCGAGCGCCTGGAGCGGGC
CGTCAACGACATCGAGAAGGAGCTGGGCGAGCGCCTCGCCGAACTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TGAGGATGCGCACGACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCCTGCCCGGCTCCCCGCCCAACACCCTGCTGGACTACTTCCCGGACGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACGGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACGGTCTACCTG
TCGGCGACCCCGGGAGCCTACGAGCTCTCCCGCTCGGACGGAGTCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAAGTCGTCGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGGCAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGTTGGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAACTCCTGCGTGAGCTGCGCGCCGGCGAGTACGACGTGCT
GGTCGGCATCAACCTCCTGCGGGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTGGACGCCGACAAGGAAG
GCTTCCTGCGCTCCGGCACCTCCCTGATCCAGACCATCGGCCGCGCCGCACGCAACGTCTCCGGCCAGGTCCACATGTTC
GCCGACAAGATCACCCCGGCGATGGCGAAGGCCATCGACGAGACCAACCGGCGCCGGGAGAAGCAGGTCGCGTACAACAA
GGAGCGGGGCATCGACCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACATCGACA
CCGAGCAGCTGCTGGGCTCGGGCTACCGCAAGGCGAAGAAGGACGGCGGTGGCACCAAGTCGCCCGTGCCCTCCCTTGGC
AGGACCGCCGAGGGCGCCAAGCCGGCCAAGGGCAGGGGCAAGGCCAAGGAGACGGTGCCGACCGACCGCCCCGCGGCCGA
ACTCAGCGAGCAGATCGAGGAACTCACCGCACGCATGCGGGCCGCCGCCGCGGATCTCCAGTTCGAGATCGCGGCCCGGC
TGCGCGACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(670-703)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.571

98.039

0.555
  uvrB Streptococcus pneumoniae R6

56.571

98.039

0.555
  uvrB Streptococcus pneumoniae D39

56.571

98.039

0.555