Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   V6M96_RS00380 Genome accession   NZ_CP146250
Coordinates   86888..88969 (-) Length   693 a.a.
NCBI ID   WP_072686507.1    Uniprot ID   -
Organism   Escherichia coli strain L26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 81888..93969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M96_RS00365 (V6M96_00365) yicH 81994..83703 (-) 1710 WP_072686508.1 AsmA family protein -
  V6M96_RS00370 (V6M96_00370) xanP 83824..85215 (-) 1392 WP_001295238.1 xanthine/proton symporter XanP -
  V6M96_RS00375 (V6M96_00375) gltS 85495..86700 (+) 1206 WP_000468836.1 sodium/glutamate symporter -
  V6M96_RS00380 (V6M96_00380) recG 86888..88969 (-) 2082 WP_072686507.1 ATP-dependent DNA helicase RecG Machinery gene
  V6M96_RS00385 (V6M96_00385) trmH 88975..89664 (-) 690 WP_001070173.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  V6M96_RS00390 (V6M96_00390) spoT 89671..91779 (-) 2109 WP_000280488.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  V6M96_RS00395 (V6M96_00395) rpoZ 91798..92073 (-) 276 WP_000135058.1 DNA-directed RNA polymerase subunit omega -
  V6M96_RS00400 (V6M96_00400) gmk 92128..92751 (-) 624 WP_001295237.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76553.50 Da        Isoelectric Point: 7.3384

>NTDB_id=855029 V6M96_RS00380 WP_072686507.1 86888..88969(-) (recG) [Escherichia coli strain L26]
MKGRLLDAVPLSSLTGVGAAQSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRM
MTCQISDGSGILTMRFFNFSAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
ATLRKLTDQALDLLDTCAIEELLPPELSKGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALR
AGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQV
ALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRHACM
TEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQ
TGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIERWMPETERYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=855029 V6M96_RS00380 WP_072686507.1 86888..88969(-) (recG) [Escherichia coli strain L26]
ATGAAAGGTCGCCTGTTAGATGCTGTCCCGCTCAGTTCCCTAACGGGCGTTGGCGCAGCACAAAGTAACAAACTGGCGAA
AATCAACCTGCATACCGTGCAGGACTTGTTGTTACACCTGCCCCTGCGCTACGAAGATCGTACCCATCTCTACCCCATTG
GTGAGCTACTGCCAGGCGTTTATGCCACGGTAGAAGGCGAAGTACTGAACTGCAATATCTCCTTCGGCGGTCGGCGCATG
ATGACCTGCCAGATTAGCGACGGTTCCGGCATTCTCACCATGCGCTTTTTCAATTTCAGCGCGGCGATGAAAAATAGCCT
GGCGACCGGGCGACGCGTGCTGGCTTACGGCGAAGCAAAGCGTGGCAAATATGGTGCGGAGATGATCCACCCGGAATACC
GCGTACAGGGCGATCTCAGCACGCCGGAGTTGCAGGAGACTCTCACACCGGTTTATCCAACCACCGAAGGCGTAAAGCAG
GCAACGCTGCGTAAATTAACCGACCAGGCACTGGATCTGCTCGACACCTGCGCCATTGAAGAGTTATTACCGCCAGAGTT
ATCAAAAGGAATGATGACGTTACCGGAGGCCTTGCGCACCCTGCATCGCCCGCCGCCGACGCTGCAACTTAGCGATCTGG
AAACCGGGCAGCATCCGGCGCAACGTCGTCTGATTCTGGAAGAACTGCTGGCGCACAACCTCAGCATGTTAGCGTTACGC
GCCGGAGCACAACGTTTTCATGCCCAGCCGCTTAGCGCCAACGACGCGCTGAAAAATAAACTCCTCGCTGCCTTACCGTT
CAAGCCAACGGGCGCACAGGCACGCGTAGTGGCGGAGATCGAGCGCGATATGGCGCTGGATGTGCCGATGATGCGCCTGG
TGCAGGGCGATGTAGGTTCCGGTAAAACGCTGGTTGCCGCCCTCGCCGCGTTGCGTGCTATTGCTCACGGTAAACAGGTG
GCCCTGATGGCACCAACCGAGTTGCTTGCCGAGCAGCACGCCAATAACTTCCGTAACTGGTTTGAACCGCTCGGTATCGA
AGTGGGCTGGCTCGCCGGTAAGCAGAAAGGAAAAGCGCGGCTGGCACAGCAAGAAGCTATCGCCAGCGGTCAGGTGCAGA
TGATTGTTGGCACTCACGCTATTTTCCAGGAACAGGTGCAGTTTAACGGCCTGGCGCTGGTGATTATCGATGAACAGCAC
CGCTTTGGCGTGCATCAACGTCTGGCGTTATGGGAAAAAGGCCAGCAACAGGGCTTCCATCCGCATCAGTTGATCATGAC
CGCCACGCCGATCCCCCGCACGCTGGCGATGACTGCGTATGCTGATCTCGATACCTCAGTCATTGATGAACTGCCGCCAG
GACGTACCCCAGTGACGACAGTGGCCATCCCGGATACGCGTCGTAACGACATTATCGACCGCGTGCGCCACGCCTGCATG
ACTGAAGGGCGTCAGGCGTACTGGGTTTGTACGTTGATTGAAGAGTCAGAGTTACTGGAAGCACAGGCAGCAGAAGCTAC
GTGGGAAGAGTTGAAACTGGCGTTGCCAGAACTGAACGTTGGCCTGGTACACGGACGGATGAAACCAGCCGAGAAGCAGG
CAGTGATGGCGTCGTTTAAACAAGGTGAGCTACACCTGCTGGTTGCCACAACCGTTATTGAAGTCGGCGTTGATGTGCCT
AACGCCAGCCTGATGATTATCGAAAACCCGGAGCGTCTCGGTCTGGCGCAGTTGCACCAGCTACGTGGGCGCGTAGGTCG
TGGCGCGGTGGCTTCTCACTGTGTGCTGCTCTACAAAACGCCGCTGTCTAAAACGGCGCAAATCCGCCTGCAAGTGCTGC
GCGACAGCAACGACGGGTTTGTGATTGCACAGAAAGACTTAGAGATTCGCGGACCGGGTGAACTGTTAGGCACGCGTCAG
ACGGGTAATGCTGAATTTAAAGTGGCAGATTTACTGCGCGATCAGGCGATGATCCCGGAAGTTCAACGCCTGGCGCGGCA
TATTCACGAACGTTACCCACAACAGGCTAAAGCCCTGATAGAACGCTGGATGCCAGAAACAGAACGTTACTCCAACGCGT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(481-588)

DEAD/DEAH box helicase (DEAD)

(273-433)

RecG wedge domain (RecG_wedge)

(15-171)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

52.53

96.97

0.509
  recG/mmsA Streptococcus pneumoniae R6

38.929

99.711

0.388
  recG/mmsA Streptococcus pneumoniae R36A

38.929

99.711

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

39.514

94.949

0.375