Detailed information NTG0854917

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QY069_RS06820
• Genome accession: NZ_CP129687
• Coordinates: 1406972..1407844 (+)
• Length: 290 a.a.
• NCBI ID: WP_003125204.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA2209
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1401972..1412844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY069_RS06795	-	1402863..1403105 (+)	243	WP_023082027.1	hypothetical protein	-
QY069_RS06805	pilA	1403360..1403812 (-)	453	WP_114064701.1	pilin	Machinery gene
QY069_RS06810	pilB	1404044..1405744 (+)	1701	WP_010793793.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QY069_RS06815	pilC	1405748..1406968 (+)	1221	WP_009315898.1	type 4a pilus biogenesis protein PilC	Machinery gene
QY069_RS06820	pilD	1406972..1407844 (+)	873	WP_003125204.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QY069_RS06825	coaE	1407841..1408452 (+)	612	WP_010793792.1	dephospho-CoA kinase	-
QY069_RS06830	yacG	1408449..1408649 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
QY069_RS06835	-	1408686..1408895 (-)	210	WP_003094660.1	hypothetical protein	-
QY069_RS06840	-	1409001..1409690 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
QY069_RS06845	-	1409687..1410157 (-)	471	WP_010793791.1	hypothetical protein	-
QY069_RS06850	-	1410154..1410579 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
QY069_RS06855	-	1410713..1411342 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QY069_RS06860	-	1411339..1411788 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
QY069_RS06865	-	1411814..1411984 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31839.89 Da
• Isoelectric Point: 7.7068

>NTDB_id=854917 QY069_RS06820 WP_003125204.1 1406972..1407844(+) (pilD) [Pseudomonas aeruginosa strain PA2209]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=854917 QY069_RS06820 WP_003125204.1 1406972..1407844(+) (pilD) [Pseudomonas aeruginosa strain PA2209]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472